DN617342

Overview
NameDN617342
Unique NameDN617342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6287 contig Csv1_Contig6287:87..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PLM2_PLAFA (Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:  235 LGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            LG S+++I  L +F +  ++G+  +G   Q F+ I DTGS+NLWVPS KC  +  C     Y S KS TY + G   E+NY SG
Sbjct:  123 LGSSNDNI-ELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKC-TTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSG 204
[Close]
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: CARDE_CYNCA (Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  241 DSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSK 381
            DS   I+ L N  D  YFGEIGIG+PPQ ++VI+DTGSS LWVPSSK
Sbjct:    1 DSGSAIVALTNDRDTSYFGEIGIGTPPQKYTVIYDTGSSVLWVPSSK 47
The following BLAST results are available for this feature:
BLAST of DN617342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
PLM2_PLAFA3.880e-1142.86Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1[more]
CARDE_CYNCA5.068e-1165.96Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617342 ID=DN617342; Name=DN617342; organism=Citrus sinensis; type=EST; length=487bp
TTCAAACTCAGCTTCAGCAGAAAACCAAAGAACATCATGGAGCAGAAACT
TCTTCGGTCAGTTTTCTGTTTATGGGTGCTAGCGTCGTGCTTGCTTCTTC
CTGCTTCCTCTAATGGCTTACGGAGAATTGGCTTGAAGAAGCGGCGTCTA
GATCTTCATAGTCTAAATGCTGCAAGAATAACAAGAAAAGAGCGATATAT
GGGGGGAGCAGGTGTTAGTGGCGTGCACCATCGTTTGGGTGATTCAGATG
AAGATATTTTGCCTTTGAAGAACTTTATGGATGCTCAATACTTTGGAGAG
ATTGGTATTGGCTCTCCCCCACAAAATTTCAGTGTCATATTTGATACCGG
CAGTTCCAATCTCTGGGTTCCATCTTCAAAGTGCTATTTCTCTATTTCCT
GCTATTTCCATTCGAGGTACAAGTCCAGAAAATCCAATACATATACCGAA
ATGGGAAAATCCTGTGAAATAAACTATGGATCTGGAT
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