DN617341

Overview
NameDN617341
Unique NameDN617341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617341_ssr81 microsatellite DN617341_ssr81:81..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6287 contig Csv1_Contig6287:1307..1867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 43/65 (66.15%), Postives = 46/65 (70.77%), Query Frame = -2
Query:  228 IFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 422
            +F L+PEQYILK   G A  CISGF A D     GPLWILGDVFM  YHTVFD G L +GFAEAA
Sbjct:  205 VFGLTPEQYILK---GEATQCISGFTAMDATL-LGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 265          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.069e-14
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = -2
Query:  228 NPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 500
            N  GE +I C  I ++P++ FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD    ++G A  A
Sbjct:  299 NSDGEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 385          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: RENI_RAT (Renin OS=Rattus norvegicus GN=Ren1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.008e-14
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = -2
Query:  231 IIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 482
            +++C ++PT+P++SF +G + + LS   Y+ K      ++CI      D+PPP GP+W+LG  F+  ++T FD    RIGFA A
Sbjct:  318 VVNCSQVPTLPDISFYLGGRTYTLSNMDYVQKNPFRNDDLCILALQGLDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA 401          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.008e-14
Identity = 43/64 (67.19%), Postives = 45/64 (70.31%), Query Frame = -2
Query:  228 FNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 419
            F L+PEQYILK   G A  CISGF A D     GPLWILGDVFM  YHTVFD G L +GFAEAA
Sbjct:  207 FGLTPEQYILK---GEATQCISGFTAMDATL-LGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 266          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.008e-14
Identity = 43/64 (67.19%), Postives = 45/64 (70.31%), Query Frame = -2
Query:  228 FNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 419
            F L+PEQYILK   G A  CISGF A D     GPLWILGDVFM  YHTVFD G L +GFAEAA
Sbjct:  222 FGLTPEQYILK---GEATQCISGFTAMDATL-LGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 281          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: CARDE_CYNCA (Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.008e-14
Identity = 43/64 (67.19%), Postives = 45/64 (70.31%), Query Frame = -2
Query:  228 FNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 419
            F L+PEQYILK   G A  CISGF A D     GPLWILGDVFM  YHTVFD G L +GFAEAA
Sbjct:  165 FGLTPEQYILK---GEATQCISGFTAMDATL-LGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 224          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.836e-14
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = -2
Query:  231 GESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 491
            GE  ++C  +  MP+V+F I    + LS   Y L       + C SGF   D+ PP GPLWILGDVF+  +++VFD G  R+G A A
Sbjct:  308 GEYAVECENLNIMPDVTFVINGVPYTLSATAYTLPDFVDGMQFCGSGFQGLDIQPPAGPLWILGDVFIRQFYSVFDRGSNRVGLAPA 394          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: PEPA_SUNMU (Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.523e-13
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = -2
Query:  228 NPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 500
            N  G+ ++ C  I ++P++ FTI    + L    YIL+  +     C SGF   D+P P G LWILGDVF+  Y  VFD G  R+G A  A
Sbjct:  301 NANGQMVVSCSSIQSLPDIVFTINGIQYPLPASAYILQNQQD----CTSGFQGMDIPTPSGELWILGDVFIRQYFAVFDRGNNRVGLAPVA 387          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: PEPA_CANFA (Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.523e-13
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = -2
Query:  228 NPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 500
            N  G+ +I C  I ++P++ FTI    + L P  YIL++ +G    C+SGF   +LP   G LWILGDVF+  Y  VFD    ++G A  A
Sbjct:  300 NSYGQMVISCSAINSLPDIVFTINGIQYPLPPSAYILQSQQG----CVSGFQGMNLPTASGELWILGDVFIRQYFAVFDRANNQVGLAPVA 386          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: PEPA1_RABIT (Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.989e-13
Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = -2
Query:  228 KVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 542
            K+ SYI     +  N +GE+II C  I ++P++ FTI +  + L    YILK  +     C+SGF   +L    G LWILGDVF+  Y TVFD    ++G A AA
Sbjct:  291 KIQSYIG----ASKNLLGENIISCSAIDSLPDIVFTINNVQYPLPASAYILKEDDD----CLSGFDGMNLDTSYGELWILGDVFIRQYFTVFDRANNQVGLAAAA 387          
The following BLAST results are available for this feature:
BLAST of DN617341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CARDH_CYNCA1.799e-1466.15Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PEPA_PIG3.069e-1442.86Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]
RENI_RAT4.008e-1438.10Renin OS=Rattus norvegicus GN=Ren1 PE=2 SV=2[more]
CARDG_CYNCA4.008e-1467.19Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDF_CYNCA4.008e-1467.19Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDE_CYNCA4.008e-1467.19Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CATE_RABIT6.836e-1442.53Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]
PEPA_SUNMU1.523e-1340.66Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2[more]
PEPA_CANFA1.523e-1340.66Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1[more]
PEPA1_RABIT1.989e-1340.95Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617341 ID=DN617341; Name=DN617341; organism=Citrus sinensis; type=EST; length=561bp
AGAATATCATAAAATTCGAAGTACTTTAAACATAGGATGATAGGATTTTA
CATAAGTATATATCAGCATATCATCTGTGGTGATGATGATGATAGTTATG
CATAAAAGCATACTGATCGTTTTACAGTACATGAAAACCATAATCTACAT
TCTACAACCCTCCTCCTCATATGAGCAGGTGATGATCGCTGCTACTACAT
AAAAACTTGACAGTAAGTAGATCATTACGCAGCCTCAGCAAAGCCGATCC
GGAGCTTACCAGAGTCGAAAACAGTGTGATAAACCCCCATGAATACATCT
CCCAGAATCCACAGAGGACCCCTTGGAGGAGGCAGGTCGAAAGCCATGAA
GCCACTGATGCAGACTTCTGCAATCCCTTCTCCGGTTTTCAGAATATACT
GCTCTGGAGAGAGGTTGAAAATTTTGTCTCCGATGGTGAATGAAACATTT
GGCATGGTTGGAATGCGACCACAGTCAATAATTGATTCTCCCATCGGATT
TGGCAGGCTGTCGCAGAGCTCATTTATATAACTGAGTACTTTCTCCTTTG
TTTGCTTTTGT
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