DN617341

Overview
NameDN617341
Unique NameDN617341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617341_ssr81 microsatellite DN617341_ssr81:81..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6287 contig Csv1_Contig6287:1307..1867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 35/86 (40.70%), Postives = 45/86 (52.33%), Query Frame = -2
Query:  237 GESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFA 491
            G  +++C  I +MP ++F I      L P  Y+L         C  G     LP P G PLWILGDVF+  Y+TVFD    R+GFA
Sbjct:  306 GNFVVNCNSIQSMPTITFVISGSPLPLPPSTYVLNNNG----YCTLGIEVTYLPSPNGQPLWILGDVFLREYYTVFDMAANRVGFA 387          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: PEPA_CALJA (Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = -2
Query:  228 NPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 500
            N  GE ++ C  I ++P++ FTI    + +    YIL+   G    C SGF   ++P   G LWILGDVF+  Y  VFD    ++G A  A
Sbjct:  301 NSNGEMVVSCSAISSLPDIVFTINGIQYPVPASAYILQDEGG----CTSGFQGMNIPTAYGELWILGDVFIRQYFAVFDRANNQVGLAPVA 387          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: PEPA4_RABIT (Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = -2
Query:  231 LSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 536
            +S I     +  N +GE++I C  I ++P++ FTI    + L    YILK  +     C SG    ++    G LWILGDVF+  Y TVFD    ++G A A
Sbjct:  289 ISNIQSYIGASKNLLGENVISCSAIDSLPDIVFTINGIQYPLPASAYILKEDDD----CTSGLEGMNVDTYTGELWILGDVFIRQYFTVFDRANNQLGLAAA 386          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: PEPA2_RABIT (Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = -2
Query:  231 LSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 536
            +S I     +  N +GE++I C  I ++P++ FTI    + L    YILK  +     C SG    ++    G LWILGDVF+  Y TVFD    ++G A A
Sbjct:  289 ISNIQSYIGASKNLLGENVISCSAIDSLPDIVFTINGIQYPLPASAYILKEDDD----CTSGLEGMNVDTYTGELWILGDVFIRQYFTVFDRANNQLGLAAA 386          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: CARP_ASPFU (Vacuolar protease A OS=Aspergillus fumigatus GN=pep2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = -2
Query:  231 GESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 491
            G+  I+C +  ++P+++FT+    F + P  Y L+    +   CIS FM  D P P GPL ILGD F+  +++V+D G   +G A+A
Sbjct:  315 GQYSIECDKRDSLPDLTFTLAGHNFTIGPYDYTLE----VQGSCISSFMGMDFPEPVGPLAILGDAFLRKWYSVYDLGNNAVGLAKA 397          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: PEPC_MONDO (Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 35/89 (39.33%), Postives = 48/89 (53.93%), Query Frame = -2
Query:  228 GESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFAEAA 491
            G+ +++C  I  MP ++F I    F L P  Y+          C  G  A  LP P G PLWILGDVF+  Y++V+D    R+GFA +A
Sbjct:  307 GDFMVNCNYIQDMPTITFVINGSQFPLPPSAYVFNNNG----YCRLGIEATYLPSPNGQPLWILGDVFLKEYYSVYDMANNRVGFAYSA 391          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: PEPC_CAVPO (Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 40/104 (38.46%), Postives = 57/104 (54.81%), Query Frame = -2
Query:  228 LSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFAEAA 536
            LS + +   +  N  GE  + C  I  +P ++F I    F LSP  YIL +GE     C+ G  +  + P  G P+WILGDVF+  Y++V+D    R+GFA AA
Sbjct:  295 LSTLVQAIGAEENEYGEYFVSCSSIQDLPTLTFVISGVEFPLSPSAYIL-SGENY---CMVGLESTYVSPGGGEPVWILGDVFLRSYYSVYDLANNRVGFATAA 394          
The following BLAST results are available for this feature:
BLAST of DN617341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
PEPB_CANFA5.417e-1140.70Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]
PEPA_CALJA5.417e-1137.36Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1[more]
PEPA4_RABIT7.074e-1136.27Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPA2_RABIT7.074e-1136.27Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
CARP_ASPFU7.074e-1136.78Vacuolar protease A OS=Aspergillus fumigatus GN=pe... [more]
PEPC_MONDO9.239e-1139.33Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV... [more]
PEPC_CAVPO9.239e-1138.46Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617341 ID=DN617341; Name=DN617341; organism=Citrus sinensis; type=EST; length=561bp
AGAATATCATAAAATTCGAAGTACTTTAAACATAGGATGATAGGATTTTA
CATAAGTATATATCAGCATATCATCTGTGGTGATGATGATGATAGTTATG
CATAAAAGCATACTGATCGTTTTACAGTACATGAAAACCATAATCTACAT
TCTACAACCCTCCTCCTCATATGAGCAGGTGATGATCGCTGCTACTACAT
AAAAACTTGACAGTAAGTAGATCATTACGCAGCCTCAGCAAAGCCGATCC
GGAGCTTACCAGAGTCGAAAACAGTGTGATAAACCCCCATGAATACATCT
CCCAGAATCCACAGAGGACCCCTTGGAGGAGGCAGGTCGAAAGCCATGAA
GCCACTGATGCAGACTTCTGCAATCCCTTCTCCGGTTTTCAGAATATACT
GCTCTGGAGAGAGGTTGAAAATTTTGTCTCCGATGGTGAATGAAACATTT
GGCATGGTTGGAATGCGACCACAGTCAATAATTGATTCTCCCATCGGATT
TGGCAGGCTGTCGCAGAGCTCATTTATATAACTGAGTACTTTCTCCTTTG
TTTGCTTTTGT
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