DN617340

Overview
NameDN617340
Unique NameDN617340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617340_ssr55 microsatellite DN617340_ssr55:55..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2797 contig Csv1_Contig2797:94..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617340 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33
Identity = 73/189 (38.62%), Postives = 121/189 (64.02%), Query Frame = 3
Query:  111 LIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI-EKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMK 674
            +IY+ VARG+ VLAE+T  +GNF +I  + L  +P ++ K +Y  + + F+YLV +  TY  +ADE  GR+IP  FL+ VK+ F S Y G K  TA A G+N +F   L+ LM +   +   +  +++  A++ EVK +++ +I  ++L RGEKIE+LV++T+ L+QQ+  F+    +++  MW +N+K
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNVK 189          
BLAST of DN617340 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.514e-30
Identity = 72/190 (37.89%), Postives = 115/190 (60.53%), Query Frame = 3
Query:  108 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKF-TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMK 674
            S++YA VARG VVLAE +  S N ++IA Q L+K+P + +   +Y+ D + F+    +G T   +ADE +GR+IP +FLE +   FV  YG     +A A  +N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT N+      FR    +    +W +N K
Sbjct:    2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCK 189          
BLAST of DN617340 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.515e-30
Identity = 67/189 (35.45%), Postives = 112/189 (59.26%), Query Frame = 3
Query:  108 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMK 674
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK 188          
BLAST of DN617340 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.515e-30
Identity = 70/191 (36.65%), Postives = 110/191 (57.59%), Query Frame = 3
Query:  108 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMK 674
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + YG  +A TA    +N EF   L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+DKTENL   +  F++T   + R M ++N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 188          
BLAST of DN617340 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.674e-29
Identity = 66/189 (34.92%), Postives = 111/189 (58.73%), Query Frame = 3
Query:  108 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMK 674
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  VK  F + Y G +A TA    +N EF   L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNVK 188          
BLAST of DN617340 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.856e-29
Identity = 66/189 (34.92%), Postives = 111/189 (58.73%), Query Frame = 3
Query:  108 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMK 674
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + Y G +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 188          
BLAST of DN617340 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.856e-29
Identity = 66/189 (34.92%), Postives = 111/189 (58.73%), Query Frame = 3
Query:  108 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMK 674
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + Y G +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 188          
BLAST of DN617340 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 6.362e-29
Identity = 66/189 (34.92%), Postives = 110/189 (58.20%), Query Frame = 3
Query:  108 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMK 674
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY    + F+Y+  +   Y  + D+   R     FL  +K  F + YG  +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 188          
BLAST of DN617340 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.673e-27
Identity = 69/193 (35.75%), Postives = 110/193 (56.99%), Query Frame = 3
Query:   96 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMK 674
            MSQ  ++YA V+   V L E+   +GNF  +A + + K+P ++ K  Y  + H F+Y+ +N   +  +  E  G QIP  FL  ++ +F+  YG   +  +P    +  F   L+E M+Y   +P+  +K+  V  QVSE KG + + IEK + RGEKIE++VDKTE L  ++  F+S    ++RK+W QN K
Sbjct:    1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDP-FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQNKK 189          
The following BLAST results are available for this feature:
BLAST of DN617340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VAM7B_DICDI9.484e-3338.62Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VA712_ARATH1.514e-3037.89Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_MOUSE7.515e-3035.45Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK7.515e-3036.65Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_RAT1.674e-2934.92Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_HUMAN2.856e-2934.92Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN2.856e-2934.92Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB6.362e-2934.92Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI2.673e-2735.75Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617340 ID=DN617340; Name=DN617340; organism=Citrus sinensis; type=EST; length=675bp
AGAGAGAGACCTCTTGGAGCTTTAAAACAAAATAAAAAATAAAAACAAGC
CCAGATCTCATCTCATCTCAACTCAACTCAATTAGTCTCATCAAAATGAG
CCAGAAATCGCTGATCTACGCCTTCGTGGCGCGCGGAAATGTTGTGCTTG
CTGAGTACACTGAGTTCAGTGGCAATTTCAACTCCATAGCCTATCAGTGC
CTCCAGAAACTCCCTGCTTCCAACAACAAGTTCACCTACAACTGTGATGC
TCACACCTTCAATTATCTCGTCGATAATGGTTACACATATTGTGTGGTCG
CAGATGAATCGTCCGGAAGACAAATACCGATGGCTTTTCTGGAGCGCGTC
AAGGATGAATTTGTTTCCAAATATGGGGGTGGAAAGGCTGCCACGGCTCC
TGCCAATGGCCTGAACAAGGAATTTGGACCAAAATTGAAAGAACTTATGC
AGTACTGTGTTGATCATCCTGAGGAGATCAGCAAGCTTGCGAAGGTTAAG
GCTCAGGTTTCAGAAGTCAAAGGTGTTATGATGGAGAATATTGAAAAGGT
TTTAGATAGGGGGGAAAAGATTGAGCTACTGGTCGATAAGACTGAGAACC
TTCATCAGCAGGCACAAGACTTTCGGAGTACCGGGACCAAAATGCGGAGG
AAAATGTGGCTGCAAAATATGAAGA
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