DN617339

Overview
NameDN617339
Unique NameDN617339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2797 contig Csv1_Contig2797:452..1042. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = -2
Query:  279 GGKAATAPANGLNKEFGPKLKELMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 572
            G +A TA    +N EF   L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   91 GSRAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12
Identity = 42/130 (32.31%), Postives = 69/130 (53.08%), Query Frame = -2
Query:  192 GGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGF---NCGK 572
            G +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+                    +C GF   NC K
Sbjct:   91 GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIKLTIIIIIVSIVFIYIIVSLLCGGFTWPNCVK 219          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12
Identity = 42/130 (32.31%), Postives = 69/130 (53.08%), Query Frame = -2
Query:  192 GGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGF---NCGK 572
            G +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+                    +C GF   NC K
Sbjct:   91 GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIISVVFIYIIVSPLCGGFTWPNCVK 219          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12
Identity = 36/98 (36.73%), Postives = 62/98 (63.27%), Query Frame = -2
Query:  279 GGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 572
            G +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   91 GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12
Identity = 36/98 (36.73%), Postives = 62/98 (63.27%), Query Frame = -2
Query:  279 GGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 572
            G +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   91 GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.199e-12
Identity = 35/98 (35.71%), Postives = 62/98 (63.27%), Query Frame = -2
Query:  279 GGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 572
            G +A TA    +N EF   L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   91 GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNV 187          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12
Identity = 41/133 (30.83%), Postives = 71/133 (53.38%), Query Frame = -2
Query:  195 FVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIE-KVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNCG 590
            F S YG  K  TA A G+N +F   L+ LM +   +   +  +++  A++ EVK +++ +I  ++L RGEKIE+LV++T+ L+QQ+  F+    +++  MW +N+                  +S C GF  G
Sbjct:   86 FKSMYGD-KGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNVKLMLVLGAIVLIIIFIIVMSYCDGFRSG 216          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.307e-12
Identity = 39/128 (30.47%), Postives = 63/128 (49.22%), Query Frame = -2
Query:  207 FVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHG 590
            FV  YG     +A A  +N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT N+      FR    +    +W +N                      CHG
Sbjct:   87 FVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLLVIIYIGVAFACHG 212          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.073e-11
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = -2
Query:  282 FVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 590
            F+  YG   +  +P    +  F   L+E M+Y   +P+  +K+  V  QVSE KG + + IEK + RGEKIE++VDKTE L  ++  F+S    ++RK+W QN
Sbjct:   88 FIRSYGQSFSQNSPTATYDP-FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQN 187          
The following BLAST results are available for this feature:
BLAST of DN617339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VAMP7_CHICK4.935e-1340.00Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_MOUSE1.099e-1232.31Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_BOVIN1.099e-1232.31Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB2.449e-1236.73Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAMP7_HUMAN2.449e-1236.73Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_RAT3.199e-1235.71Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAM7B_DICDI4.178e-1230.83Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VA712_ARATH9.307e-1230.47Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAM7A_DICDI2.073e-1138.83Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617339 ID=DN617339; Name=DN617339; organism=Citrus sinensis; type=EST; length=591bp
TATAATTGACGGGACTCATTCACAAGCAAAAATAAGTTTTCGGTTTTCTT
TGTAACAAATATAGGGAAACTGCTAACTTTTTTAGACTAAATACAAAGTC
AAGATCATATATATTTATATATCTCTTTCACAATATCATCACAGAAGCTC
TTAGAAGAGCGTAATATAAGCCTCCTGGAGAATAGCACTCATTTTCCGCA
GTTGAAACCATGGCAAACAGAGAGGACTATGATGAGGATCAAGGCAATCA
GTATTCCCAAAACAATCAGCTTGATCTTCATATTTTGCAGCCACATTTTC
CTCCGCATTTTGGTCCCCGTACTCCGAAAGTCTTGTGCCTGCTGATGAAG
GTTCTCAGTCTTATCGACCAGTAGCTCAATCTTTTCCCCCCTATCTAAAA
CCTTTTCAATATTCTCCATCATAACACCTTTGACTTCTGAAACCTGAGCC
TTAACCTTCGCAAGCTTGCTGATCTCCTCAGGATGATCAACACAGTACTG
CATAAGTTCTTTCAATTTTGGTCCAAATTCCTTGTTCAGGCCATTGGCAG
GAGCCGTGGCAGCCTTTCCACCCCCATATTTGGAAACAAAT
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