DN617338

Overview
NameDN617338
Unique NameDN617338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:186..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617338 vs. ExPASy Swiss-Prot
Match: METK_FRASN (S-adenosylmethionine synthetase OS=Frankia sp. (strain EAN1pec) GN=metK PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.734e-49
Identity = 109/216 (50.46%), Postives = 134/216 (62.04%), Query Frame = 3
Query:   63 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI--------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAA 686
            M T LFTSESV EGHPDK+ DQ+SD++LDA L+ DP+S+VA ET   T  V V GE+TTK  VD   +VR+    IG+ S   G D   C V V+I  QSPDIAQGV      R E          GAGDQG MFG+A DET E MPL   LA +L  RL+ VRK+    +LRPDGKTQVT+EY +      PVR+ TV++S+QH   +  D + A
Sbjct:    1 MATRLFTSESVTEGHPDKIADQVSDSILDAMLKDDPKSRVAVETMITTGQVHVAGEVTTKTYVDIASVVRERILEIGYDSSKKGFDGASCGVSVSIGSQSPDIAQGVDTAHEARVEGSTEDDLDRQGAGDQGLMFGFACDETPELMPLPIALAHRLARRLSAVRKDGQVGYLRPDGKTQVTIEYEDGK----PVRLDTVVVSSQHAADIDLDTLLA 212          
BLAST of DN617338 vs. ExPASy Swiss-Prot
Match: METK_CORA7 (S-adenosylmethionine synthetase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=metK PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.734e-49
Identity = 110/209 (52.63%), Postives = 129/209 (61.72%), Query Frame = 3
Query:   75 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKR------PEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIA 683
            LFTSESV EGHPDK+CD ISDA+LDA LE+DP++ VA ET   T  V V GE+ T   V+  +IVR T   IGF S DVG D   C V V I +QS +I  GV      R       +  GAGDQG MFGYAT+ET EFMPL    A  L  RLT VRK      LRPDGKTQVT  Y  ++   VP R+ T++ISTQHD  VT + +A
Sbjct:   11 LFTSESVTEGHPDKICDAISDAILDALLEEDPDAHVAVETLVTTGQVHVVGEVRTSGYVEIPQIVRKTLVEIGFTSSDVGFDGHTCGVNVAIGEQSQEIGAGVDASTEVRSGTFEDDDQYGAGDQGLMFGYATNETPEFMPLPISTAHHLSRRLTHVRKEGIVPSLRPDGKTQVTFAYDEND---VPTRLETIVISTQHDPEVTQEWLA 216          
BLAST of DN617338 vs. ExPASy Swiss-Prot
Match: METK_STRMK (S-adenosylmethionine synthetase OS=Stenotrophomonas maltophilia (strain K279a) GN=metK PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.489e-49
Identity = 106/199 (53.27%), Postives = 134/199 (67.34%), Query Frame = 3
Query:   63 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVR--KNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQH 653
            M ++LFTSESV+EGHPDK+ DQISDAVLDA L QD  ++VACET  KT + +V GEITT A +D E + R     IG+ S DVG D   C VL  I +QSP IAQGV     K+PE++GAGDQG MFGYAT+ET  +MP +  L+ +L  +  ++R  KNS  SWLRPD K+QVT+ Y N     V   +  V++STQH
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILTQDQRARVACETMVKTGVAIVAGEITTSAWIDLEALTRKVITDIGYDSSDVGFDGATCGVLNLIGKQSPHIAQGVD---RKKPEEMGAGDQGLMFGYATNETDSYMPAAIHLSHRLVEQQAKIRKKKNSPLSWLRPDAKSQVTLRYENG----VVSAIDAVVLSTQH 192          
BLAST of DN617338 vs. ExPASy Swiss-Prot
Match: METK_PSYA2 (S-adenosylmethionine synthetase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=metK PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.489e-49
Identity = 100/202 (49.50%), Postives = 134/202 (66.34%), Query Frame = 3
Query:   75 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEI 680
            LFTSESV+EGHPDK+ DQISDA+LDA L QD  ++VACET  KT  V++ GEITT A +D E+IVRDT   IG+   D+G D + C V+  + +QSP+IAQGV       PE+ GAGDQG MFGYA++ET   MP     A +L  R +E+R+     WLRPD K Q+T++Y        PV +  V++STQHD +++  ++
Sbjct:    6 LFTSESVSEGHPDKMADQISDAILDAILRQDLHARVACETLVKTGAVILAGEITTTANIDVERIVRDTVNGIGYHHSDLGFDGETCAVINMLGKQSPEIAQGVD---RADPEEQGAGDQGLMFGYASNETEVLMPAPIEYAHRLMERQSELRRAGELPWLRPDAKAQITLKYDGSK----PVAIDAVVLSTQHDPSISQADL 200          
BLAST of DN617338 vs. ExPASy Swiss-Prot
Match: METK_AMOPS (S-adenosylmethionine synthetase OS=Amoeba proteus symbiotic bacterium GN=metK PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.489e-49
Identity = 106/202 (52.48%), Postives = 136/202 (67.33%), Query Frame = 3
Query:   75 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEI 680
            +FTSESV+EGHPDK+ DQISDA+LDA L +DP ++VACET  KT MV+V GEITT A VD E I R+  + IG+ S D+G D   C VL  I +QS DIAQGV    TK    +GAGDQG MFGYA+ ET   MP     + +L AR  E+RKN+   WLRPDGK Q+T++Y  D G   PV + T++ STQH   +++ ++
Sbjct:    5 VFTSESVSEGHPDKIADQISDAILDAILAKDPLARVACETFVKTGMVLVGGEITTSAWVDVETITREVIKDIGYNSSDMGFDWASCSVLSAIGKQSLDIAQGVDNRETK---ILGAGDQGLMFGYASRETDVCMPAPIAYSHRLMARQAELRKNNKLPWLRPDGKCQLTLKY--DQGK--PVAIDTIVFSTQHAPEISHKDL 199          
BLAST of DN617338 vs. ExPASy Swiss-Prot
Match: METK_XANCP (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. campestris GN=metK PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.781e-49
Identity = 105/208 (50.48%), Postives = 135/208 (64.90%), Query Frame = 3
Query:   63 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVR--KNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEI 680
            M ++LFTSESV+EGHPDK+ DQISDAVLDA L QD  ++VACET  KT + +V GE+TT A +D E + R     IG+ S DVG D + C VL  I +QSPDI QGV     K PE  GAGDQG MFGYAT+ET  +MP +  L+ +L  +  ++R  KNS  SWLRPD K+QVT+ Y +     V   +  V++ST HD  V   ++
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTSAWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVD---RKNPEQQGAGDQGLMFGYATNETDSYMPAAIHLSHRLVEQQAKIRKKKNSALSWLRPDAKSQVTLRYEDG----VATAIDAVVLSTHHDPGVKQKDL 201          
BLAST of DN617338 vs. ExPASy Swiss-Prot
Match: METK_MYCSS (S-adenosylmethionine synthetase OS=Mycobacterium sp. (strain MCS) GN=metK PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.781e-49
Identity = 112/207 (54.11%), Postives = 131/207 (63.29%), Query Frame = 3
Query:   75 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK---VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH-GHFTK-----RPEDI-GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV 665
            LFTSESV EGHPDK+CD ISD+VLD+ L QDP S+VA ET   T  V V GE+TT AK    D    VR     +G+ S D G D   C V + I  QSPDIAQGV   H T+      P D+ GAGDQG MFGYA  +T E MPL   LA +L  RLTEVRKN    +LRPDGKTQVTV+Y      + PVR+ TV++STQH E +
Sbjct:    6 LFTSESVTEGHPDKICDAISDSVLDSLLAQDPRSRVAVETLVTTGQVHVVGEVTTSAKEAFADITNTVRHRILEVGYDSSDKGFDGTTCGVNIGIGAQSPDIAQGVDTAHETRVEGAGDPLDLQGAGDQGLMFGYAIKDTPELMPLPIALAHRLARRLTEVRKNGVLDYLRPDGKTQVTVQY----DGVTPVRLDTVVLSTQHAEGI 208          
BLAST of DN617338 vs. ExPASy Swiss-Prot
Match: METK_MYCSK (S-adenosylmethionine synthetase OS=Mycobacterium sp. (strain KMS) GN=metK PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.781e-49
Identity = 112/207 (54.11%), Postives = 131/207 (63.29%), Query Frame = 3
Query:   75 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK---VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH-GHFTK-----RPEDI-GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV 665
            LFTSESV EGHPDK+CD ISD+VLD+ L QDP S+VA ET   T  V V GE+TT AK    D    VR     +G+ S D G D   C V + I  QSPDIAQGV   H T+      P D+ GAGDQG MFGYA  +T E MPL   LA +L  RLTEVRKN    +LRPDGKTQVTV+Y      + PVR+ TV++STQH E +
Sbjct:    6 LFTSESVTEGHPDKICDAISDSVLDSLLAQDPRSRVAVETLVTTGQVHVVGEVTTSAKEAFADITNTVRHRILEVGYDSSDKGFDGTTCGVNIGIGAQSPDIAQGVDTAHETRVEGAGDPLDLQGAGDQGLMFGYAIKDTPELMPLPIALAHRLARRLTEVRKNGVLDYLRPDGKTQVTVQY----DGVTPVRLDTVVLSTQHAEGI 208          
BLAST of DN617338 vs. ExPASy Swiss-Prot
Match: METK_MYCSJ (S-adenosylmethionine synthetase OS=Mycobacterium sp. (strain JLS) GN=metK PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.781e-49
Identity = 112/207 (54.11%), Postives = 131/207 (63.29%), Query Frame = 3
Query:   75 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK---VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH-GHFTK-----RPEDI-GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV 665
            LFTSESV EGHPDK+CD ISD+VLD+ L QDP S+VA ET   T  V V GE+TT AK    D    VR     +G+ S D G D   C V + I  QSPDIAQGV   H T+      P D+ GAGDQG MFGYA  +T E MPL   LA +L  RLTEVRKN    +LRPDGKTQVTV+Y      + PVR+ TV++STQH E +
Sbjct:    6 LFTSESVTEGHPDKICDAISDSVLDSLLAQDPRSRVAVETLVTTGQVHVVGEVTTSAKEAFADITNTVRHRILEVGYDSSDKGFDGTTCGVNIGIGAQSPDIAQGVDTAHETRVEGAGDPLDLQGAGDQGLMFGYAIKDTPELMPLPIALAHRLARRLTEVRKNGVLDYLRPDGKTQVTVQY----DGVTPVRLDTVVLSTQHAEGI 208          
BLAST of DN617338 vs. ExPASy Swiss-Prot
Match: METK_BURS3 (S-adenosylmethionine synthetase OS=Burkholderia sp. (strain 383) GN=metK PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.781e-49
Identity = 104/194 (53.61%), Postives = 130/194 (67.01%), Query Frame = 3
Query:   72 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQH 653
            +LFTSESV+EGHPDK+ DQISDA+LDA LEQD  S+VA ET   T +V++ GEITT A +DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DET E MPL   L+ +L  R   +R++    WLRPD K+QVTV Y +      P  + TV++STQH
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGVDRAHDDN-LDQGAGDQGLMFGYACDETPELMPLPIYLSHRLVERQASLRRDGRLQWLRPDAKSQVTVRYVDGK----PHSIDTVVLSTQH 193          
The following BLAST results are available for this feature:
BLAST of DN617338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_FRASN5.734e-4950.46S-adenosylmethionine synthetase OS=Frankia sp. (st... [more]
METK_CORA75.734e-4952.63S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_STRMK7.489e-4953.27S-adenosylmethionine synthetase OS=Stenotrophomona... [more]
METK_PSYA27.489e-4949.50S-adenosylmethionine synthetase OS=Psychrobacter a... [more]
METK_AMOPS7.489e-4952.48S-adenosylmethionine synthetase OS=Amoeba proteus ... [more]
METK_XANCP9.781e-4950.48S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]
METK_MYCSS9.781e-4954.11S-adenosylmethionine synthetase OS=Mycobacterium s... [more]
METK_MYCSK9.781e-4954.11S-adenosylmethionine synthetase OS=Mycobacterium s... [more]
METK_MYCSJ9.781e-4954.11S-adenosylmethionine synthetase OS=Mycobacterium s... [more]
METK_BURS39.781e-4953.61S-adenosylmethionine synthetase OS=Burkholderia sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617338 ID=DN617338; Name=DN617338; organism=Citrus sinensis; type=EST; length=688bp
TCTGGTCTTAAGTCTGAATCTTAGATCTGCGCCGAAACACTTGCCAGCCA
CAGCTTGATAAGATGGAGACCTTTCTATTCACCTCTGAATCTGTGAACGA
GGGTCACCCCGACAAGTTGTGCGACCAGATCTCTGATGCGGTGCTTGACG
CCTGCCTTGAGCAGGATCCTGAGAGCAAGGTTGCCTGTGAGACATGCACC
AAGACCAACATGGTCATGGTCTTTGGAGAGATTACCACCAAGGCCAAGGT
AGACTATGAGAAGATTGTTCGCGACACTTGCCGTTCCATTGGATTTGTTT
CTGATGATGTGGGTCTTGACGCCGATCACTGCAAAGTCCTGGTCAATATT
GAGCAACAAAGCCCGGATATTGCCCAGGGTGTTCATGGCCACTTTACAAA
GCGCCCTGAGGACATTGGTGCTGGTGACCAGGGCCATATGTTTGGTTATG
CTACTGATGAGACCTCTGAATTTATGCCTTTGAGCCATGTCCTTGCCACC
AAACTTGGTGCTCGTCTCACGGAGGTTAGGAAGAATAGTACCTGCTCTTG
GCTAAGGCCCGATGGGAAGACCCAGGTCACTGTTGAGTACTACAACGACA
ATGGTGCCATGGTCCCAGTCCGTGTCCACACGGTCCTCATTTCAACCCAG
CATGATGAGACTGTCACAAATGATGAAATTGCTGCTGA
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