DN617337

Overview
NameDN617337
Unique NameDN617337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1256..1836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK2_ELAUM (S-adenosylmethionine synthetase 2 OS=Elaeagnus umbellata GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.306e-26
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM+TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWE+VKPLKWEKPQ+
Sbjct:  337 VKENFDFRPGMITINLDLKRGGNDRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKPQS 393          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK2_VITVI (S-adenosylmethionine synthetase 2 OS=Vitis vinifera GN=METK2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.706e-26
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM++INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK QA
Sbjct:  337 VKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKTQA 393          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK1_SOLLC (S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.706e-26
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = -1
Query:  416 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 583
            VKE+FDFRPGMM+INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ
Sbjct:  337 VKENFDFRPGMMSINLDLKRGGNRRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 392          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK1_POPTR (S-adenosylmethionine synthetase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.910e-26
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGMMTINLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
Sbjct:  337 VKENFDFRPGMMTINLDLKRGGN-RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 392          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK_SOLBR (S-adenosylmethionine synthetase OS=Solanum brevidens GN=SAMS PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.483e-26
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = -1
Query:  416 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 583
            VKE+FDFRPGMM+INLDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLKWE PQ
Sbjct:  337 VKENFDFRPGMMSINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKWENPQ 392          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK2_SOLLC (S-adenosylmethionine synthetase 2 OS=Solanum lycopersicum GN=SAM2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.483e-26
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM++INLDL RGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KP+A
Sbjct:  337 VKENFDFRPGMISINLDLLRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPEA 393          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK1_ORYSJ (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. japonica GN=SAM1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.483e-26
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM+ INLDLK+GGNGR+LKTAAYGHFGRDDPDFTWEVVKPLKWEKP A
Sbjct:  340 VKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK1_ORYSI (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. indica GN=SAM1 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 6.483e-26
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM+ INLDLK+GGNGR+LKTAAYGHFGRDDPDFTWEVVKPLKWEKP A
Sbjct:  340 VKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK3_ACTCH (S-adenosylmethionine synthetase 3 (Fragment) OS=Actinidia chinensis GN=SAM3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.106e-25
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = -1
Query:  416 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 583
            VKESFDFRPGM+ I+LDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLKWEKPQ
Sbjct:  304 VKESFDFRPGMIAIHLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKWEKPQ 359          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK2_DAUCA (S-adenosylmethionine synthetase 2 OS=Daucus carota GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.106e-25
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLKWEKPQA
Sbjct:  337 VKETFDFRPGMIAINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKWEKPQA 393          
The following BLAST results are available for this feature:
BLAST of DN617337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
METK2_ELAUM1.306e-2691.23S-adenosylmethionine synthetase 2 OS=Elaeagnus umb... [more]
METK2_VITVI1.706e-2692.98S-adenosylmethionine synthetase 2 OS=Vitis vinifer... [more]
METK1_SOLLC1.706e-2694.64S-adenosylmethionine synthetase 1 OS=Solanum lycop... [more]
METK1_POPTR2.910e-2696.49S-adenosylmethionine synthetase 1 OS=Populus trich... [more]
METK_SOLBR6.483e-2692.86S-adenosylmethionine synthetase OS=Solanum brevide... [more]
METK2_SOLLC6.483e-2689.47S-adenosylmethionine synthetase 2 OS=Solanum lycop... [more]
METK1_ORYSJ6.483e-2689.47S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK1_ORYSI6.483e-2689.47S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK3_ACTCH1.106e-2592.86S-adenosylmethionine synthetase 3 (Fragment) OS=Ac... [more]
METK2_DAUCA1.106e-2591.23S-adenosylmethionine synthetase 2 OS=Daucus carota... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617337 ID=DN617337; Name=DN617337; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTAGGCAAACCGCACACACATCAGAGTGATATTAATAAGCAAAACA
ACTATCTGGCTTTAGCCAAAGTTACAAATTAATACAACTCGCTGCTGCCT
TCATTCTACATTCCAAAAATAGTCGTAAGCAAAAGGAAGAATTTTACTAA
TTCCAGGCACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAACAG
TGGTGACATGGTACATTAAACCAAAACCAAAAAAGAAGTGGGGAAAGAAG
AAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGGAG
ATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCAT
CCACTACCAATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTTTC
AACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTT
CCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGTC
TTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCAT
CATTCCTGGCCTGAAATCAAAGCTTTCCTTCAC
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