DN617337

Overview
NameDN617337
Unique NameDN617337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1256..1836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK_GOSHI (S-adenosylmethionine synthetase OS=Gossypium hirsutum GN=SAMS PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.035e-23
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLKW+K  A
Sbjct:  337 VKETFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRDDTDFTWEVVKPLKWDKVHA 393          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK4_ARATH (S-adenosylmethionine synthetase 4 OS=Arabidopsis thaliana GN=METK4 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.352e-23
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKESFDFRPGM++INLDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLK  K QA
Sbjct:  337 VKESFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKSNKVQA 393          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK2_CATRO (S-adenosylmethionine synthetase 2 OS=Catharanthus roseus GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.352e-23
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK+EK +A
Sbjct:  337 VKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKFEKVEA 393          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK2_BRAJU (S-adenosylmethionine synthetase 2 OS=Brassica juncea GN=MSAMS2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.352e-23
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKESFDFRPGM++INLDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLK  K QA
Sbjct:  337 VKESFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKSNKVQA 393          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK3_PETHY (S-adenosylmethionine synthetase 3 OS=Petunia hybrida GN=SAM3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = -1
Query:  416 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 583
            VKE+FDFRPGM+ INLDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLK EK Q
Sbjct:  337 VKENFDFRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDTDFTWEVVKPLKCEKAQ 392          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK_WHEAT (S-adenosylmethionine synthetase OS=Triticum aestivum GN=SAMS PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.306e-23
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM+ INLDLKRGG GR+LKTAAYGHFGR+  DFTWEVVKPLKWEKP A
Sbjct:  340 VKENFDFRPGMIIINLDLKRGGKGRYLKTAAYGHFGREGADFTWEVVKPLKWEKPSA 396          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK3_PICSI (S-adenosylmethionine synthetase 3 OS=Picea sitchensis GN=METK3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.933e-23
Identity = 47/54 (87.04%), Postives = 52/54 (96.30%), Query Frame = -1
Query:  422 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 583
            +K++FDFRPGM+TINLDLKRGGNGRF KTAAYGHFGRDDPDFTWE+VKPLK EK
Sbjct:  337 IKKNFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEIVKPLKQEK 390          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK1_BETVU (S-adenosylmethionine synthetase 1 OS=Beta vulgaris GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.762e-23
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  341 VKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 396          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK2_ORYSJ (S-adenosylmethionine synthetase 2 OS=Oryza sativa subsp. japonica GN=SAM2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = -1
Query:  422 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 583
            VKE+FDFRPGMMTINLDLKRGGN RF+KTAAYGHFGR+DPDFTWEVVKPLK+EK
Sbjct:  339 VKENFDFRPGMMTINLDLKRGGN-RFIKTAAYGHFGREDPDFTWEVVKPLKYEK 391          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK3_ATRNU (S-adenosylmethionine synthetase 3 OS=Atriplex nummularia GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.349e-22
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKESFDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  341 VKESFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
The following BLAST results are available for this feature:
BLAST of DN617337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
METK_GOSHI1.035e-2385.96S-adenosylmethionine synthetase OS=Gossypium hirsu... [more]
METK4_ARATH1.352e-2389.47S-adenosylmethionine synthetase 4 OS=Arabidopsis t... [more]
METK2_CATRO1.352e-2385.96S-adenosylmethionine synthetase 2 OS=Catharanthus ... [more]
METK2_BRAJU1.352e-2389.47S-adenosylmethionine synthetase 2 OS=Brassica junc... [more]
METK3_PETHY1.766e-2389.29S-adenosylmethionine synthetase 3 OS=Petunia hybri... [more]
METK_WHEAT2.306e-2384.21S-adenosylmethionine synthetase OS=Triticum aestiv... [more]
METK3_PICSI3.933e-2387.04S-adenosylmethionine synthetase 3 OS=Picea sitchen... [more]
METK1_BETVU8.762e-2384.21S-adenosylmethionine synthetase 1 OS=Beta vulgaris... [more]
METK2_ORYSJ1.144e-2290.74S-adenosylmethionine synthetase 2 OS=Oryza sativa ... [more]
METK3_ATRNU4.349e-2284.21S-adenosylmethionine synthetase 3 OS=Atriplex numm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617337 ID=DN617337; Name=DN617337; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTAGGCAAACCGCACACACATCAGAGTGATATTAATAAGCAAAACA
ACTATCTGGCTTTAGCCAAAGTTACAAATTAATACAACTCGCTGCTGCCT
TCATTCTACATTCCAAAAATAGTCGTAAGCAAAAGGAAGAATTTTACTAA
TTCCAGGCACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAACAG
TGGTGACATGGTACATTAAACCAAAACCAAAAAAGAAGTGGGGAAAGAAG
AAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGGAG
ATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCAT
CCACTACCAATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTTTC
AACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTT
CCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGTC
TTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCAT
CATTCCTGGCCTGAAATCAAAGCTTTCCTTCAC
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