DN617337

Overview
NameDN617337
Unique NameDN617337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1256..1836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK_MESCR (S-adenosylmethionine synthetase OS=Mesembryanthemum crystallinum GN=METK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.418e-22
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = -1
Query:  416 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 583
            VKE+FDFRPGM+  NLDL RGGN R+LKTAAYGHFGRDD DFTWEVVKPLKWEKPQ
Sbjct:  337 VKETFDFRPGMIANNLDLLRGGN-RYLKTAAYGHFGRDDADFTWEVVKPLKWEKPQ 391          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK_CARPA (S-adenosylmethionine synthetase OS=Carica papaya GN=SAMS PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.418e-22
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = -1
Query:  437 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKP 583
            VKE+FDFRPGM+TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKP
Sbjct:  337 VKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKP 385          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  341 VKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  341 VKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = -1
Query:  422 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 583
            +KE+FDFRPGM++INLDLKRGGN RF KTAAYGHFGR+DPDFTWE VK LKWEK
Sbjct:  339 IKENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEK 392          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  341 VKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK_MEDFA (S-adenosylmethionine synthetase OS=Medicago falcata GN=SAMS PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.265e-21
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = -1
Query:  422 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 583
            VKE+FDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLK  K
Sbjct:  339 VKETFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKGGK 392          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.265e-21
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = -1
Query:  431 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 583
            +KE+FDFRPGMM INLDLKRGGN RF KTAAYGHFGRDDPDFTWEVVKPLK
Sbjct:  337 IKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVVKPLK 387          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.652e-21
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = -1
Query:  431 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 583
            +KE+FDFRPGMM INLDLKRGGN RF KTAAYGHFGRDDPDFTWEV+KPLK
Sbjct:  337 IKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVIKPLK 387          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK2_DIACA (S-adenosylmethionine synthetase 2 OS=Dianthus caryophyllus GN=SAM2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.819e-21
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM+ I LDLK+GGN R+LKTAAYGHFGR+DPDFTWE  K LKWEKPQA
Sbjct:  341 VKENFDFRPGMIAIALDLKKGGN-RYLKTAAYGHFGREDPDFTWEAAKTLKWEKPQA 396          
The following BLAST results are available for this feature:
BLAST of DN617337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
METK_MESCR7.418e-2285.71S-adenosylmethionine synthetase OS=Mesembryanthemu... [more]
METK_CARPA7.418e-2293.88S-adenosylmethionine synthetase OS=Carica papaya G... [more]
METK4_ATRNU9.688e-2282.46S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]
METK2_ATRNU9.688e-2282.46S-adenosylmethionine synthetase 2 OS=Atriplex numm... [more]
METK1_PICSI9.688e-2283.33S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]
METK1_ATRNU9.688e-2282.46S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]
METK_MEDFA1.265e-2187.04S-adenosylmethionine synthetase OS=Medicago falcat... [more]
METK3_ARATH1.265e-2190.20S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK4_BRAJU1.652e-2188.24S-adenosylmethionine synthetase 4 OS=Brassica junc... [more]
METK2_DIACA2.819e-2180.70S-adenosylmethionine synthetase 2 OS=Dianthus cary... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617337 ID=DN617337; Name=DN617337; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTAGGCAAACCGCACACACATCAGAGTGATATTAATAAGCAAAACA
ACTATCTGGCTTTAGCCAAAGTTACAAATTAATACAACTCGCTGCTGCCT
TCATTCTACATTCCAAAAATAGTCGTAAGCAAAAGGAAGAATTTTACTAA
TTCCAGGCACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAACAG
TGGTGACATGGTACATTAAACCAAAACCAAAAAAGAAGTGGGGAAAGAAG
AAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGGAG
ATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCAT
CCACTACCAATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTTTC
AACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTT
CCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGTC
TTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCAT
CATTCCTGGCCTGAAATCAAAGCTTTCCTTCAC
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