DN617337

Overview
NameDN617337
Unique NameDN617337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1256..1836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK1_HORVU (S-adenosylmethionine synthetase 1 OS=Hordeum vulgare GN=SAM1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.819e-21
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM+TINLDLK+GGN RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  339 VKENFDFRPGMITINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.201e-21
Identity = 46/57 (80.70%), Postives = 53/57 (92.98%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM++INLDLK+GGN RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  339 VKENFDFRPGMISINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK_MUSAC (S-adenosylmethionine synthetase OS=Musa acuminata GN=METK PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.071e-20
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPG++TINL LKRGG  R+LKTAAYGHFGRDDPDFTWEVVKPL+ EKP A
Sbjct:  338 VKENFDFRPGLITINLGLKRGGY-RYLKTAAYGHFGRDDPDFTWEVVKPLELEKPAA 393          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK1_TRIMO (S-adenosylmethionine synthetase 1 OS=Triticum monococcum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.386e-20
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM++INLDLK+GGN RF+KTAAYGHFGR+D DFTWEVVKPLK++K  A
Sbjct:  339 VKENFDFRPGMISINLDLKKGGN-RFIKTAAYGHFGREDADFTWEVVKPLKFDKASA 394          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.070e-20
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  413 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 583
            VKE+FDFRPGM++INLDLK+GG  RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  339 VKENFDFRPGMISINLDLKKGGK-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK1_VITVI (S-adenosylmethionine synthetase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.184e-19
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = -1
Query:  422 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 583
            +K++FDFRPGM++INLDLKRGGN RF KTAAYGHFGRDDPDF+WE VK LK EK
Sbjct:  337 IKKNFDFRPGMISINLDLKRGGNFRFQKTAAYGHFGRDDPDFSWETVKQLKPEK 390          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK_CAMSI (S-adenosylmethionine synthetase OS=Camellia sinensis GN=SAM PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.327e-19
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = -1
Query:  449 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 583
            VKESFDFRPGM+ INLDLKRGGN RFLKTAAYGHFGRDDPDFTWE
Sbjct:  337 VKESFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWE 381          

HSP 2 Score: 20.4014 bits (41), Expect = 1.327e-19
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = -3
Query:  414 SCEAPQVGKASS 449
            S EAPQVG+ SS
Sbjct:  382 SGEAPQVGQTSS 393          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK3_VITVI (S-adenosylmethionine synthetase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.547e-19
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = -1
Query:  431 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 583
            +KE+FDFRPGM+ INLDLKRGGN RF KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  337 IKENFDFRPGMIAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = -1
Query:  431 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 583
            +KE+FDFRPGMM+INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  337 IKENFDFRPGMMSINLDLLRGGNYRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of DN617337 vs. ExPASy Swiss-Prot
Match: METK2_SOLTU (S-adenosylmethionine synthetase 2 OS=Solanum tuberosum GN=METK2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = -1
Query:  431 VKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 583
            +KE+FDFRPGMM+INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  337 IKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
The following BLAST results are available for this feature:
BLAST of DN617337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
METK1_HORVU2.819e-2182.46S-adenosylmethionine synthetase 1 OS=Hordeum vulga... [more]
METK3_HORVU8.201e-2180.70S-adenosylmethionine synthetase 3 OS=Hordeum vulga... [more]
METK_MUSAC1.071e-2082.46S-adenosylmethionine synthetase OS=Musa acuminata ... [more]
METK1_TRIMO2.386e-2078.95S-adenosylmethionine synthetase 1 OS=Triticum mono... [more]
METK2_HORVU4.070e-2078.95S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK1_VITVI1.184e-1979.63S-adenosylmethionine synthetase 1 OS=Vitis vinifer... [more]
METK_CAMSI1.327e-1993.33S-adenosylmethionine synthetase OS=Camellia sinens... [more]
METK3_VITVI1.547e-1984.31S-adenosylmethionine synthetase 3 OS=Vitis vinifer... [more]
METK3_SOLLC4.500e-1982.35S-adenosylmethionine synthetase 3 OS=Solanum lycop... [more]
METK2_SOLTU4.500e-1982.35S-adenosylmethionine synthetase 2 OS=Solanum tuber... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617337 ID=DN617337; Name=DN617337; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTAGGCAAACCGCACACACATCAGAGTGATATTAATAAGCAAAACA
ACTATCTGGCTTTAGCCAAAGTTACAAATTAATACAACTCGCTGCTGCCT
TCATTCTACATTCCAAAAATAGTCGTAAGCAAAAGGAAGAATTTTACTAA
TTCCAGGCACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAACAG
TGGTGACATGGTACATTAAACCAAAACCAAAAAAGAAGTGGGGAAAGAAG
AAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGGAG
ATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCAT
CCACTACCAATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTTTC
AACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTT
CCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGTC
TTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCAT
CATTCCTGGCCTGAAATCAAAGCTTTCCTTCAC
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