DN617334

Overview
NameDN617334
Unique NameDN617334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: CIAO1_DROER (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila erecta GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 56/218 (25.69%), Postives = 100/218 (45.87%), Query Frame = 2
Query:    8 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEG--KSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG----ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW------NLSNCKLKATLAGHTGYVNTVAVSPDGSLCAS 625
            L+L+ T++ H   +  +A      ++  +   DK+I +W LT    T+        GH   ++++  S  GQ+  S S+D    +W  + G  +      GH  +V SV++S     + + SRD+++ +W   G    EC   +   ++HT+ V  V + P   +  + SAS+D T+K++      N  +C   ATL  HT  +  +    DG    S
Sbjct:    4 LILEHTLQGHKGRIWGVAWH-PKGNVFASCGEDKAIRIWSLTGS--TWSTKTILSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLATCSRDKSVWIWEVAGDDEFECAAVL---NSHTQDVKRVVWHPT--KEVLASASYDNTIKMYAEDPVDNDWDC--TATLTSHTSTIWGIDFDADGERLVS 211          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: CIAO1_AEDAE (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Aedes aegypti GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 53/190 (27.89%), Postives = 94/190 (49.47%), Query Frame = 2
Query:   80 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLT-GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEG--KSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL----SNCKLKATLAGHTGYVNTVAVSPDGSLCAS 625
            +++ T   DK+I +W   ++     VA+  L+ GHS  ++DV  S  GQ+  S S+D  + +WD   G  +      GH  +V SV++S     + + SRD+++ +W    E +Y      + HT+ V  V + P+  +  + SAS+D T+K++      S+     TL  H   V +++    G+  AS
Sbjct:   27 NVLATCGEDKTIRIW--AEDASQRWVAKTVLSDGHSRTIRDVAWSPCGQYLASASFDATVAIWDKKSGEFECNATLEGHENEVKSVSWSKSGSLLATCSRDKSVWVWEVAQEDEYECAAVLNTHTQDVKKVEWHPH--EDILASASYDNTIKLYKEDLADSDWSSFDTLVSHESTVWSISFDGSGNRLAS 212          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: Y1491_SYNY3 (Uncharacterized WD repeat-containing protein sll1491 OS=Synechocystis sp. (strain PCC 6803) GN=sll1491 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 59/191 (30.89%), Postives = 96/191 (50.26%), Query Frame = 2
Query:   44 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSAS-RDRTIKLW-NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDG 610
            ++TA+    D   + V A+ D  I +  L  +E  Y     + +  ++F  D+ +S+DGQ+ L+ + D  + +  + +G      VGHT  V  VAFS D   IVS S  DRTI++W    G    T+ +    T   + V F+P+  Q    +   DRT+K W+ +  +L  T     G++N +AV+PDG
Sbjct:   63 IITALNITPDGKYLAV-ATADNQITLIDLANQEVVYS----QRSPVNNFA-DLAISADGQW-LAIAADNNVDVRRVRDGMRVETLVGHTDKVSGVAFSPDGETIVSVSGGDRTIRIWERASGNLIQTLADNLGPT---TSVVFTPDGSQFITGAIGQDRTIKFWDANTFELLGTSPQQPGFINGLAVTPDG 243          

HSP 2 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 54/204 (26.47%), Postives = 97/204 (47.55%), Query Frame = 2
Query:   23 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGS--WDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            T+  HTD V+ +A   D   ++  +  D++I +W     E+  G   + L  +      VV + DG   ++G+   D  ++ WD    +           +  +A + D R++V A R+  +K WN L + K          E ++ +  SPN     + +A+ + T+ +++L+N K   TL GH G+V ++A SPDG+   SG
Sbjct:  139 TLVGHTDKVSGVAFSPDGETIVSVSGGDRTIRIW-----ERASGNLIQTLADNLGPTTSVVFTPDGSQFITGAIGQDRTIKFWDANTFELLGTSPQQPGFINGLAVTPDGRKLVGAVRN-FVKAWN-LADAKELFSVRGPSLE-INTIAVSPNNRW--VATANKEGTIMIFDLANGKQVTTLRGHQGWVLSLAFSPDGNTLYSG 332          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WDR12_BOVIN (Ribosome biogenesis protein WDR12 OS=Bos taurus GN=WDR12 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 61/223 (27.35%), Postives = 99/223 (44.39%), Query Frame = 2
Query:   29 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLT----------------KEEKTYGVARRR-----LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKA-TLAGHTGYVNTVAVSPDGSLCASG 628
            R H   V +IA          + S DK + +W                   K++KT  +   R     L+GH   +  V L SD +   S SWD  +++WD+  G       G+ K    +++S   +++ S S DR I+LW+   +    +     +HT WV+ V++SP T +  ++S S D  VK+W+  +CK     LA H   V +V  +  G L + G
Sbjct:  186 RGHAGSVDSIAVD-STGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPIVTLSGHKEAISSV-LWSDAEEICSASWDHTIKVWDVESGSLKSTLTGN-KVFNCISYSPLCKRLASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSP-THEQQLISGSLDNMVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDSGLLLSGG 404          

HSP 2 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 59/204 (28.92%), Postives = 93/204 (45.59%), Query Frame = 2
Query:   23 TMRAHTDMVTAIATPIDNS--DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            T+  HTD+V  +A    +S   ++++AS D++I++W    E      A     GH+  V  + + S G    SGSWD  L++W                   +V    ++    S +R R  +    LG  +  I     H E +S V +S       I SASWD T+KVW++ +  LK+TL G+  + N ++ SP     ASG
Sbjct:  135 TIVGHTDVVKDVAWVKKDSLSCLLLSASMDQTILLWEWNVERNKVK-ALHCCRGHAGSVDSIAVDSTGTKFCSGSWDKMLKIWS------------------TVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPIVTLSGHKEAISSVLWSD---AEEICSASWDHTIKVWDVESGSLKSTLTGNKVF-NCISYSPLCKRLASG 315          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: TIPD_DICDI (Protein tipD OS=Dictyostelium discoideum GN=tipD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 44/158 (27.85%), Postives = 82/158 (51.90%), Query Frame = 2
Query:  158 ARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            A++R TGH+  +  +  +S G    +G  D  +++WD+  G+     +G ++ ++SV+FS ++  I+  S D + +LWNT LG  ++T+     H   V   +F  +     +V+ S DRT+K+W+L       T+   +   + V +   G+  ASG
Sbjct:  316 AKKRWTGHNSEIYCMAFNSIGNLLATGGGDKCVKVWDVISGQQKSTLLGASQSIVSVSFSPNDESILGTSNDNSARLWNTELGRSRHTL---TGHIGKVYTGKFINSN---RVVTGSHDRTIKLWDLQKGYCTRTIFCFSSCNDLVILGGSGTHLASG 467          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: NUDF_EMENI (Nuclear distribution protein nudF OS=Emericella nidulans GN=nudF PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 60/203 (29.56%), Postives = 94/203 (46.31%), Query Frame = 2
Query:   23 TMRAHTDMVTAIAT-PIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGEL--RLWDLAEG-KSARRFVGHTKDVLSVAFSIDN-RQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGS 613
            T+ +H D VT +A  P+  S  + + S D +I +W     +   G   R L GH   V  +         L  S   +L  +LWD ++   + R   GH   V SV F   N   ++SASRD T+++W+ + G C   I+   A   W+  V  SP+     +VS   D+ + VW +S+ + KA L GH  ++     +P  S
Sbjct:  109 TLTSHRDAVTCVAFHPVFTS--LASGSEDCTIKIW-----DWELGEIERTLKGHIRGVSGLDYGGQKGNTLLASCSSDLTIKLWDPSKDYANIRTLSGHDHSVSSVRFLTSNDNHLISASRDGTLRIWDVSTGFCVKVIKS--ATESWIRDV--SPSFDGKWLVSGGRDQAITVWEVSSAEPKAALLGHENFIECCVFAPPAS 300          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: GBB4_MOUSE (Guanine nucleotide-binding protein subunit beta-4 OS=Mus musculus GN=Gnb4 PE=2 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 48/181 (26.52%), Postives = 84/181 (46.41%), Query Frame = 2
Query:   86 IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            I+T+S D +  +W +   ++T        TGHS  V  + LS D +  +SG+ D   +LWD+ +G   + F GH  D+ +V+F        + S D T +L++   + +  +   D     ++ V FS +     +++   D    VW+         LAGH   V+ + V+ DG   A+G
Sbjct:  157 IITSSGDTTCALWDIETGQQT-----TTFTGHSGDVMSLSLSPDLKTFVSGACDASSKLWDIRDGMCRQSFTGHISDINAVSFFPSGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKS--GRLLLAGYDDFNCSVWDALKGGRSGVLAGHDNRVSCLGVTDDGMAVATG 330          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: CIAO1_DROGR (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila grimshawi GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 58/215 (26.98%), Postives = 102/215 (47.44%), Query Frame = 2
Query:    8 LVLKGTMRAHTDMVTAIAT-PIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG----ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL----SNCKLKATLAGHTGYVNTVAVSPDGSLCAS 625
            L+L+ T++ H   +  +A  P  NS    +   DK+I +W  ++   T+        GH   +++V  S  G++  S S+D    +W   E  +     GH  +V SV++S     + + SRD+++ +W   G    EC   +   +AHT+ V  V + P+  +  + SAS+D T+K++      S+    ATL+ HT  V ++    DG    S
Sbjct:    4 LILEHTLQGHKGRIWGVAWHPKGNS--FASCGEDKAIRIW--SQSGNTWTTKTILSDGHKRTIREVRWSPCGEYLASASFDATTAIWSKHECNAT--LEGHENEVKSVSWSQSGGLLATCSRDKSVWIWEVAGDDEFECAAVL---NAHTQDVKRVVWHPS--KEILASASYDNTIKMYAESALDSDWDCTATLSSHTSTVWSIDFEADGERLVS 207          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: CIAO1_DICDI (Probable cytosolic iron-sulfur protein assembly protein OS=Dictyostelium discoideum GN=ciao1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 52/193 (26.94%), Postives = 91/193 (47.15%), Query Frame = 2
Query:   74 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFV----GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN--LSNCKLKATLAGHTGYVNTVAVSPDGSLCASGG 631
            N +++ T + DK I +W      K +G+ +  L GH   V+ V  S  G+F    S+D    +W+ ++ +     V    GHT +V SVA+      + + SRD++I +W    +  +  +     H + + CV + PN  +  + S+S+D T+K W     + +   TL GH   +  +A + DG    S G
Sbjct:   35 NGEILATCANDKYIQIWSKDTNGK-WGLVQS-LEGHEKTVRRVAWSPCGRFLAGASFDASTSIWEKSKDELEFTHVSSLEGHTYEVKSVAWDSTGTLLATCSRDKSIWIWQMEDDNDFECLSINSGHGQDIKCVLWHPN--EELLASSSYDDTIKFWKDIDGDWECINTLTGHESSIWDLAFNKDGDKLVSCG 223          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WSB2_HUMAN (WD repeat and SOCS box-containing protein 2 OS=Homo sapiens GN=WSB2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 56/197 (28.43%), Postives = 94/197 (47.72%), Query Frame = 2
Query:    5 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-----TLGECKYT-----IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLA 565
            GL+L   +  H D+V  ++     S ++V+ASRDK++ +W L K  K   V    L+GH  +V    +S D     S + +  + LW +      R+  GH   V+S  FS D+  +V+AS D  + +W+      L    +T     + + D H   +  V FSP  L   + + + DR +++W L   +LK  +A
Sbjct:  143 GLLLLN-LSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQV----LSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWDPYTGERLRSLHHTQVDPAMDDSDVHISSLRSVCFSPEGLY--LATVADDRLLRIWAL---ELKTPIA 329          
The following BLAST results are available for this feature:
BLAST of DN617334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
CIAO1_DROER1.262e-1225.69Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_AEDAE1.262e-1227.89Probable cytosolic iron-sulfur protein assembly pr... [more]
Y1491_SYNY31.649e-1230.89Uncharacterized WD repeat-containing protein sll14... [more]
WDR12_BOVIN1.649e-1227.35Ribosome biogenesis protein WDR12 OS=Bos taurus GN... [more]
TIPD_DICDI1.649e-1227.85Protein tipD OS=Dictyostelium discoideum GN=tipD P... [more]
NUDF_EMENI1.649e-1229.56Nuclear distribution protein nudF OS=Emericella ni... [more]
GBB4_MOUSE1.649e-1226.52Guanine nucleotide-binding protein subunit beta-4 ... [more]
CIAO1_DROGR1.649e-1226.98Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DICDI1.649e-1226.94Probable cytosolic iron-sulfur protein assembly pr... [more]
WSB2_HUMAN2.153e-1228.43WD repeat and SOCS box-containing protein 2 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617334 ID=DN617334; Name=DN617334; organism=Citrus sinensis; type=EST; length=633bp
TGAAGGTCTCGTTCTCAAAGGAACCATGCGCGCCCACACCGACATGGTAA
CGGCGATCGCCACCCCAATCGACAACTCTGACATGATCGTGACGGCCTCG
CGTGACAAGTCCATCATTGTCTGGCACCTCACTAAGGAGGAAAAGACCTA
CGGCGTTGCGCGCCGTCGTTTGACCGGCCACTCTCACTTCGTGCAGGACG
TCGTCCTCTCCTCGGACGGCCAGTTCGCTCTCTCCGGCTCCTGGGACGGC
GAGCTCCGCCTCTGGGATTTGGCCGAGGGCAAATCCGCCCGCAGGTTCGT
CGGCCACACTAAGGACGTTCTCTCCGTCGCCTTCTCGATCGACAACCGTC
AGATTGTATCGGCCTCTCGTGACCGTACGATCAAGTTGTGGAACACGCTC
GGCGAGTGCAAGTACACGATTCAAGAGGGAGACGCTCACACTGAGTGGGT
TTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCCG
CCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCTT
AAGGCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGTC
GCCGGATGGTTCGTTGTGTGCCAGTGGAGGGGA
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