DN617334

Overview
NameDN617334
Unique NameDN617334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WSB2_BOVIN (WD repeat and SOCS box-containing protein 2 OS=Bos taurus GN=WSB2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 56/197 (28.43%), Postives = 94/197 (47.72%), Query Frame = 2
Query:    5 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-----TLGECKYT-----IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLA 565
            GL+L   +  H D+V  ++     S ++V+ASRDK++ +W L K  K   V    L+GH  +V    +S D     S + +  + LW +      R+  GH   V+S  FS D+  +V+AS D  + +W+      L    +T     + + D H   +  V FSP  L   + + + DR +++W L   +LK  +A
Sbjct:  145 GLLLLN-LSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQV----LSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWDPYTGERLRSLHHTQLNPPMDDSDVHISSLRSVCFSPEGLY--LATVADDRLLRIWAL---ELKTPIA 331          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WSB1_HUMAN (WD repeat and SOCS box-containing protein 1 OS=Homo sapiens GN=WSB1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 59/209 (28.23%), Postives = 91/209 (43.54%), Query Frame = 2
Query:   35 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-----------LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            HT++V  +    D S ++V+ASRDK++ VW L    K  G   + L GH ++V     S D     S      + LW++ +    R+  GH  DV++  FS D   + +AS D  + +W+            L      I  G A+  WV  V FS + L   + S + D+ V+ W +             G     A S DGS+ A+G
Sbjct:  169 HTEVVRDLTFAPDGSLILVSASRDKTLRVWDL----KDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAVFLWNMDKYTMIRKLEGHHHDVVACDFSPDGALLATASYDTRVYIWDPHNGDILMEFGHLFPPPTPIFAGGANDRWVRSVSFSHDGLH--VASLADDKMVRFWRIDEDYPVQVAPLSNGL--CCAFSTDGSVLAAG 369          

HSP 2 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 2
Query:  233 SGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQI-VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCAS 625
            +G  +G +++WD+  GK     V HT+ V  + F+ D   I VSASRD+T+++W+ L +    ++    H  WV    FSP++     V AS  + V +WN+    +   L GH   V     SPDG+L A+
Sbjct:  145 TGLNNGRIKIWDVYTGKLLLNLVDHTEVVRDLTFAPDGSLILVSASRDKTLRVWD-LKDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGAS--KAVFLWNMDKYTMIRKLEGHHHDVVACDFSPDGALLAT 273          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WDR48_AEDAE (WD repeat-containing protein 48 homolog OS=Aedes aegypti GN=AAEL012158 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 53/205 (25.85%), Postives = 89/205 (43.41%), Query Frame = 2
Query:   29 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWV-----SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            + H + V A+     N   + +A RD  I VW+ + +  +     + +  H+ +V D+VL   G+  +S S D  +++W+  +G        H   V ++A++ D  Q+ SA  D+ I LW+       T       T  +     S    + N     IV  S + T+++W+   C   A L GH   V  + VS DG    SG
Sbjct:   26 KRHRNGVNALQLDTING-RLYSAGRDAIIRVWN-SMQNNSQEPYIQSMEHHNDWVNDIVLCCGGRNLISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDINTLTALTASNNTVTTSSITGSKDSIYSLAMNPSGTVIVCGSTENTLRIWDPRTCNKIAKLKGHAENVKALVVSEDGQHVISG 228          

HSP 2 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 48/179 (26.82%), Postives = 85/179 (47.49%), Query Frame = 2
Query:   23 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWH------LTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 541
            T+R H D V A+A   D  + + +A  DK+I +W       LT    T  V    +TG    +  + ++  G   + GS +  LR+WD        +  GH ++V ++  S D + ++S S D  IK W ++G+ +  +Q    H+E V  +  + N     ++S S D+ + + +L N
Sbjct:  112 TLRTHRDYVQALAYAKDR-EQVASAGLDKAIFLWDINTLTALTASNNT--VTTSSITGSKDSIYSLAMNPSGTVIVCGSTENTLRIWDPRTCNKIAKLKGHAENVKALVVSEDGQHVISGSSDGKIKQW-SIGQ-QRCVQTISVHSEGVWALLMTDNFSH--VISGSRDKKIIMTDLRN 283          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WDR12_CHLRE (Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_128420 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 60/216 (27.78%), Postives = 95/216 (43.98%), Query Frame = 2
Query:   14 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWH-------------LTKEEKTYGVARRR---------LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVS-ASRDRTIKLWNTLGEC---KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYV 583
            L  T R H D V A+A    +     +   D  ++VW               +K+++  G A            L GH H V  V   ++     SG WD  +R WD++ G +A  + G +K VL +A    +  +V+    DR ++LW+T G+       +    AH  WV+ V + P++ Q  I SAS D T+K+W++        L+ HT  V
Sbjct:  197 LVATYRGHEDGVEAVAAS-PSGRRFASCGWDGKLLVWEGGEQLRWAAGTAEASKKKRKTGTANGSAAAGAGGADLRGHLHCVSSVAWPAENSL-FSGGWDHSVRRWDVSSGAAADTYNG-SKAVLCIASHAASPALVAFGCSDRALRLWDTRGKAGSDALAVTTQGAHGGWVTAVAWCPSS-QHHIASASHDGTIKMWDIRTQIPLGMLSHHTDKV 408          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: PRL2_ARATH (Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana GN=PRL2 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 49/193 (25.39%), Postives = 88/193 (45.60%), Query Frame = 2
Query:   26 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSP 604
            ++ H   V ++A    N +   T S D++I +W +       GV +  LTGH   V+ + +S+   +  S   D +++ WDL + K  R + GH   V  +A       +++  RD   ++W+   + +  +   D+    V  V   P    P +++ S D T+K W+L   K  AT+  H   V  +A+ P
Sbjct:  166 LQGHLGWVRSVAFDPSN-EWFCTGSADRTIKIWDVAT-----GVLKLTLTGHIGQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRTKMQIFVLPHDSD---VFSVLARPT--DPQVITGSHDSTIKFWDLRYGKSMATITNHKKTVRAMALHP 347          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: GBB4_RAT (Guanine nucleotide-binding protein subunit beta-4 OS=Rattus norvegicus GN=Gnb4 PE=2 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 48/181 (26.52%), Postives = 84/181 (46.41%), Query Frame = 2
Query:   86 IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            I+T+S D +  +W +   ++T        TGHS  V  + LS D +  +SG+ D   +LWD+ +G   + F GH  D+ +V+F        + S D T +L++   + +  +   D     ++ V FS +     +++   D    VW+         LAGH   V+ + V+ DG   A+G
Sbjct:  157 IITSSGDTTCALWDIETGQQT-----TTFTGHSGDVMSLSLSPDLKTFVSGACDASSKLWDIRDGMCRQSFTGHISDINAVSFFPSGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKS--GRLLLAGYDDFNCSVWDALKGGRAGVLAGHDNRVSCLGVTDDGMAVATG 330          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: GBB3_HUMAN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Homo sapiens GN=GNB3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 53/203 (26.11%), Postives = 96/203 (47.29%), Query Frame = 2
Query:   26 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHL-TKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR-TVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            + AHT  ++      DN+  IVT+S D +  +W + T ++KT  V      GH+     + +S D    +SG+ D   +LWD+ EG   + F GH  D+ ++ F  +   I + S D + +L++   + +      ++    ++ V FS   L   ++ A +D     VW+    +    L+GH   V+ + V+ DG   A+G
Sbjct:  139 LSAHTGYLSCCRFLDDNN--IVTSSGDTTCALWDIETGQQKTVFV------GHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELICFSHESIICGITSVAFS---LSGRLLFAGYDDFNCNVWDSMKSERVGILSGHDNRVSCLGVTADGMAVATG 330          

HSP 2 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 46/159 (28.93%), Postives = 76/159 (47.80%), Query Frame = 2
Query:  161 RRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL---GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            RR L GH   +  +  ++D +  +S S DG+L +WD             +  V++ A++     +     D    ++N     G  K + +E  AHT ++SC RF  +     IV++S D T  +W++   + K    GHTG   ++AVSPD +L  SG
Sbjct:   48 RRTLRGHLAKIYAMHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYNLKSREGNVKVS-RELSAHTGYLSCCRFLDDN---NIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFNLFISG 202          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: CIAO1_DROSI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila simulans GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 57/218 (26.15%), Postives = 99/218 (45.41%), Query Frame = 2
Query:    8 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEG--KSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG----ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW------NLSNCKLKATLAGHTGYVNTVAVSPDGSLCAS 625
            L+L+ T++ H   +  +A      ++  +   DK+I +W LT    T+        GH   ++++  S  GQ+  S S+D    +W  + G  +      GH  +V SV++S     + + SRD+++ +W   G    EC   +   + HT+ V  V + P   +  + SAS+D T+K++      N  +C   ATL  HT  V  +    DG    S
Sbjct:    4 LILEHTLQGHKGRIWGVAWH-PKGNVFASCGEDKAIRIWSLTGN--TWSTKTILSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLATCSRDKSVWIWEVAGDDEFECAAVL---NPHTQDVKRVVWHPT--KDVLASASYDNTIKMFAEEPIDNDWDC--TATLTSHTSTVWGIDFDADGERLVS 211          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WDR37_HUMAN (WD repeat-containing protein 37 OS=Homo sapiens GN=WDR37 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.812e-12
Identity = 47/166 (28.31%), Postives = 80/166 (48.19%), Query Frame = 2
Query:   62 TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD----GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 547
            T I   D +  + +D+  +   ++ +  T  V    L  H    Q VV++SD    G+ A++ SWD    L+D+   +      GH +++         R +V++SRD T +LW+      +++     HT+ V+   F   T+   +VS S DRTVKVW+L N +
Sbjct:  241 TSISGEDEVECSDKDEPDLDGDVSSDCPTIRVPLTSLKSH----QGVVIASDWLVGGKQAVTASWDRTANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVF---TVGDNVVSGSDDRTVKVWDLKNMR 399          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: UTP15_MOUSE (U3 small nucleolar RNA-associated protein 15 homolog OS=Mus musculus GN=Utp15 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.812e-12
Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = 2
Query:  215 DGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTI-VSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASGG 631
            DGQ  ++GS DG ++L+D+      R+F GHTK V +V F+ DN  +VS + D T+KLW+     +  T +E   H+++V C     + L P + V+ S+D TVK+++    K       H   V +V + P G L  S G
Sbjct:   91 DGQLLVAGSEDGVVQLFDINGRAPLRQFEGHTKAVHTVDFTADNYHVVSGADDYTVKLWDIPNSKEILTFKE---HSDYVRC--GCASKLNPDLFVTGSYDHTVKIFDARTNK-NVLCVEHGQPVESVLLFPSGGLLVSAG 225          
The following BLAST results are available for this feature:
BLAST of DN617334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
WSB2_BOVIN2.153e-1228.43WD repeat and SOCS box-containing protein 2 OS=Bos... [more]
WSB1_HUMAN2.153e-1228.23WD repeat and SOCS box-containing protein 1 OS=Hom... [more]
WDR48_AEDAE2.153e-1225.85WD repeat-containing protein 48 homolog OS=Aedes a... [more]
WDR12_CHLRE2.153e-1227.78Ribosome biogenesis protein WDR12 homolog OS=Chlam... [more]
PRL2_ARATH2.153e-1225.39Protein pleiotropic regulator PRL2 OS=Arabidopsis ... [more]
GBB4_RAT2.153e-1226.52Guanine nucleotide-binding protein subunit beta-4 ... [more]
GBB3_HUMAN2.153e-1226.11Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
CIAO1_DROSI2.153e-1226.15Probable cytosolic iron-sulfur protein assembly pr... [more]
WDR37_HUMAN2.812e-1228.31WD repeat-containing protein 37 OS=Homo sapiens GN... [more]
UTP15_MOUSE2.812e-1234.75U3 small nucleolar RNA-associated protein 15 homol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617334 ID=DN617334; Name=DN617334; organism=Citrus sinensis; type=EST; length=633bp
TGAAGGTCTCGTTCTCAAAGGAACCATGCGCGCCCACACCGACATGGTAA
CGGCGATCGCCACCCCAATCGACAACTCTGACATGATCGTGACGGCCTCG
CGTGACAAGTCCATCATTGTCTGGCACCTCACTAAGGAGGAAAAGACCTA
CGGCGTTGCGCGCCGTCGTTTGACCGGCCACTCTCACTTCGTGCAGGACG
TCGTCCTCTCCTCGGACGGCCAGTTCGCTCTCTCCGGCTCCTGGGACGGC
GAGCTCCGCCTCTGGGATTTGGCCGAGGGCAAATCCGCCCGCAGGTTCGT
CGGCCACACTAAGGACGTTCTCTCCGTCGCCTTCTCGATCGACAACCGTC
AGATTGTATCGGCCTCTCGTGACCGTACGATCAAGTTGTGGAACACGCTC
GGCGAGTGCAAGTACACGATTCAAGAGGGAGACGCTCACACTGAGTGGGT
TTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCCG
CCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCTT
AAGGCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGTC
GCCGGATGGTTCGTTGTGTGCCAGTGGAGGGGA
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