DN617334

Overview
NameDN617334
Unique NameDN617334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: PRP46_CANAL (Pre-mRNA-splicing factor PRP46 OS=Candida albicans GN=PRP46 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.265e-12
Identity = 50/214 (23.36%), Postives = 90/214 (42.06%), Query Frame = 2
Query:    2 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKS-----ARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            E  +L+    AH   + AIA     +   VT S D +I +W            +  LTGH   ++ + +S    +  SG  D  LR WDL    S      R + GH   V S+    +   + S  +D  +++W+     +     G  HT  ++ +    N   P ++++S D T+++W+L   K +  +  H+  + ++   P  +   SG
Sbjct:   73 EWKLLRTLAGAHQGWIRAIALDEITNKWYVTGSADSTIKIWDFENNS-----LKAVLTGHVLGIRSLCISKRHPYLFSGGEDKSLRCWDLERSNSDAGCQIRSYHGHLGGVYSIGLHPELDVLFSGGKDCVVRVWDIRSRVEAMTLLG--HTNDITSIETDYN--DPQVITSSMDGTIRLWDLRKSKTELLITNHSKSIRSMKSHPKEATFVSG 277          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WSB1_XENTR (WD repeat and SOCS box-containing protein 1 OS=Xenopus tropicalis GN=wsb1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 59/209 (28.23%), Postives = 91/209 (43.54%), Query Frame = 2
Query:   35 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-LGECKY----------TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            HT++V  +    D S ++V+ASRDK++ VW L    K  G   + L GH ++V     S D     S      + LWD+ +    R+  GH  DV++  FS D   + +AS D  + +W+  +G   +           I  G  +  WV  V FS + +   I S + D  V+ W +             G     A S DGS+ A+G
Sbjct:  169 HTEVVRDLTFAPDGSLILVSASRDKTLRVWDL----KDDGNMMKVLRGHQNWVYCCAFSPDSSMLCSVGAGKAVFLWDMDKYTMIRKLDGHYNDVVACEFSPDGALLATASYDTRVYVWDPHIGSILFEFGHLFPPPTPIFAGGDNGRWVKSVSFSHDGVH--IASLADDNLVRFWRIDKSYPVEVAPLSKGL--CCAFSTDGSVLAAG 369          

HSP 2 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 42/132 (31.82%), Postives = 69/132 (52.27%), Query Frame = 2
Query:  233 SGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQI-VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCAS 625
            +G  +G +++WD+  GK     + HT+ V  + F+ D   I VSASRD+T+++W+ L +    ++    H  WV C  FSP++     V A   + V +W++    +   L GH   V     SPDG+L A+
Sbjct:  145 TGLSNGRIKIWDVYTGKLLLNLMDHTEVVRDLTFAPDGSLILVSASRDKTLRVWD-LKDDGNMMKVLRGHQNWVYCCAFSPDSSMLCSVGAG--KAVFLWDMDKYTMIRKLDGHYNDVVACEFSPDGALLAT 273          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WDR37_PONAB (WD repeat-containing protein 37 OS=Pongo abelii GN=WDR37 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 47/174 (27.01%), Postives = 82/174 (47.13%), Query Frame = 2
Query:   38 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD----GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 547
            T    A  + I   D +  + +D+  +   ++ +  T  V    L  H    Q VV+++D    G+ A++ SWD    L+D+   +      GH +++         R +V++SRD T +LW+      +++     HT+ V+   F   T+   +VS S DRTVKVW+L N +
Sbjct:  234 TPQPVADTSQISGEDEVECSDKDEPDLDGDVSSDCPTIRVPLTSLKSH----QGVVIAADWLVGGKQAVTASWDRTANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVF---TVGDNVVSGSDDRTVKVWDLKNMR 400          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: CIAO1_DROWI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila willistoni GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 54/216 (25.00%), Postives = 99/216 (45.83%), Query Frame = 2
Query:    8 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEG--KSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG----ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL----SNCKLKATLAGHTGYVNTVAVSPDGSLCAS 625
            L+L+ T++ H   +  +A      +   +   DK+I +W L+    ++        GH   ++++  S  GQ+  S S+D    +W  + G  +      GH  +V SV++S     + + SRD+++ +W   G    EC   +   + HT+ V  V + P   +  + SAS+D T+K++      S+    ATL+ HT  V ++    DG    S
Sbjct:    4 LILEHTLQGHKGRIWGVAWH-PKGNTFASCGEDKAIRIWSLSGN--SWSTKTILSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSKSGGLLATCSRDKSVWIWEVAGDDEFECAAVL---NPHTQDVKRVVWHPT--KEILASASYDNTIKMFAESALDSDWDCTATLSSHTSTVWSIDFDADGERLVS 211          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: CDC4_YEAST (Cell division control protein 4 OS=Saccharomyces cerevisiae GN=CDC4 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 58/198 (29.29%), Postives = 83/198 (41.92%), Query Frame = 2
Query:   74 NSDMIVTASRDKSIIVWHLTKE--------------------EKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-----TLGECKYTIQEG-------------DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLK 553
            N   IVT SRD ++ VW L KE                    E  Y V   R  GH   V+ V  S  G   +SGS+D  L +WD+A+ K      GHT  + S  +  + ++ +SAS D TI++W+       GEC Y                    HT  V  +R S   L    VSA+ D +++ W+ ++   K
Sbjct:  476 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR--GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENIWNNGECSYATNSASPCAKILGAMYTLQGHTALVGLLRLSDKFL----VSAAADGSIRGWDANDYSRK 665          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: APAF_DANRE (Apoptotic protease-activating factor 1 OS=Danio rerio GN=apaf1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 2
Query:  206 LSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCAS 625
            +S +  F   GS DG +++ ++   K++ +  GHTK V    F+ D   ++++S D TI++W    GEC         H E V       ++  P + S S+D TVKVW+L+  ++   L  H G V +  VS DG L A+
Sbjct:  974 ISRNAAFVALGSEDGTVQVIEVPSSKASVKLSGHTKTVHHCQFTDDCEILITSSEDSTIRVWKWRTGECMVL----QGHMEPVRKFHLLSSSSSPHLFSWSFDGTVKVWDLTRGQMLQDLVCHEGAVLSCDVSSDGRLFAT 1110          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WDR37_XENLA (WD repeat-containing protein 37 OS=Xenopus laevis GN=wdr37 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.069e-11
Identity = 42/140 (30.00%), Postives = 70/140 (50.00%), Query Frame = 2
Query:  194 QDVVLSSD----GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVS 601
            Q VV+++D    G+ A++ SWD    L+D+   +      GH +++         R +V++SRD T +LW+      +++     HT+ V+   F   T+   +VS S DRTVKVW+L N +           VN ++VS
Sbjct:  282 QGVVIAADWLVGGKQAVTASWDRTANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVF---TVGDNVVSGSDDRTVKVWDLKNMRSPIATIRTDSAVNRISVS 418          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: UTP15_RAT (U3 small nucleolar RNA-associated protein 15 homolog OS=Rattus norvegicus GN=Utp15 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.069e-11
Identity = 48/141 (34.04%), Postives = 76/141 (53.90%), Query Frame = 2
Query:  215 DGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTI-VSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASGG 631
            DGQ  ++GS DG ++L+D++     R+F GHTK V +V F+ D   +VS + D T+KLW+     +  T +E   H+++V C     + L P + V+ S+D TVK+++    K       H   V +V + P G L  S G
Sbjct:   91 DGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEILTFKE---HSDYVRC--GCASKLNPDLFVTGSYDHTVKMFDARTNK-NVLCVEHGQPVESVLLFPSGGLLVSAG 225          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: POF11_SCHPO (F-box/WD repeat-containing protein pof11 OS=Schizosaccharomyces pombe GN=pof11 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.069e-11
Identity = 56/178 (31.46%), Postives = 85/178 (47.75%), Query Frame = 2
Query:   80 DMIVTASRDKSIIVWHLTKEE--KTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFV----GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTV 592
            +++V+ S D +II+W        K Y        GH+  V  VV+S +  + +S S D   R+W L     A   +    GH   V SV +S     IV+AS DRT++ W+ T G C   I    AH   ++C +++       IVS S D T++++  S+ KL   L GH   + TV
Sbjct:  274 NLLVSGSSDSTIIIWDWQNRRPLKVY-------FGHTDNVLGVVVSEN--YIISSSRDHTARVWRLDATSPAEACMHVLRGHLASVNSVQYSSKTGLIVTASSDRTLRTWDITTGHCIRIIH---AHQRGIACAQYNGKF----IVSGSSDLTIRIFEASSGKLLRMLQGHEDLIRTV 435          

HSP 2 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 44/160 (27.50%), Postives = 81/160 (50.62%), Query Frame = 2
Query:   74 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLW-----NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS 538
            + +++V+ S+D+++ VW +      Y     +L GHS  V  +         +SGS D  + +WD    +  + + GHT +VL V   +    I+S+SRD T ++W     +    C + ++    H   V+ V++S  T    IV+AS DRT++ W+++
Sbjct:  230 DDEIMVSGSKDRTVSVWDVNSRFILY-----KLYGHSGSVLCLDFCRRRNLLVSGSSDSTIIIWDWQNRRPLKVYFGHTDNVLGVV--VSENYIISSSRDHTARVWRLDATSPAEACMHVLR---GHLASVNSVQYSSKT--GLIVTASSDRTLRTWDIT 377          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: GBB1_TOBAC (Guanine nucleotide-binding protein subunit beta-1 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.069e-11
Identity = 58/210 (27.62%), Postives = 97/210 (46.19%), Query Frame = 2
Query:   26 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDV-VLSSDGQFALSGSWDGELRLWDLAEGKSARR-FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK---YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAG----HTGYVNTVAVSPDGSLCASG 628
            +  H   V++     D    ++T+S D++ ++W +T   +T        +GH+  VQ V + SS+ +  +SGS D   RLWD      A+R F GH  DV +V F  D  +  + S D T +L++   E +   Y    GD     V+ + FS +     +  ++ D    VW+    K+   L G    H G ++ + +S DGS   +G
Sbjct:  152 LSGHKGYVSSCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVQSVSISSSNPRLFVSGSCDTTARLWDTRVASRAQRTFYGHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTEHQLQVYYQPHGDGDIPHVTSMAFSISGRLLFVGYSNGD--CYVWDTLLAKVVLNLGGVQNSHEGRISCLGLSADGSALCTG 359          
The following BLAST results are available for this feature:
BLAST of DN617334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
PRP46_CANAL6.265e-1223.36Pre-mRNA-splicing factor PRP46 OS=Candida albicans... [more]
WSB1_XENTR8.182e-1228.23WD repeat and SOCS box-containing protein 1 OS=Xen... [more]
WDR37_PONAB8.182e-1227.01WD repeat-containing protein 37 OS=Pongo abelii GN... [more]
CIAO1_DROWI8.182e-1225.00Probable cytosolic iron-sulfur protein assembly pr... [more]
CDC4_YEAST8.182e-1229.29Cell division control protein 4 OS=Saccharomyces c... [more]
APAF_DANRE8.182e-1231.91Apoptotic protease-activating factor 1 OS=Danio re... [more]
WDR37_XENLA1.069e-1130.00WD repeat-containing protein 37 OS=Xenopus laevis ... [more]
UTP15_RAT1.069e-1134.04U3 small nucleolar RNA-associated protein 15 homol... [more]
POF11_SCHPO1.069e-1131.46F-box/WD repeat-containing protein pof11 OS=Schizo... [more]
GBB1_TOBAC1.069e-1127.62Guanine nucleotide-binding protein subunit beta-1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617334 ID=DN617334; Name=DN617334; organism=Citrus sinensis; type=EST; length=633bp
TGAAGGTCTCGTTCTCAAAGGAACCATGCGCGCCCACACCGACATGGTAA
CGGCGATCGCCACCCCAATCGACAACTCTGACATGATCGTGACGGCCTCG
CGTGACAAGTCCATCATTGTCTGGCACCTCACTAAGGAGGAAAAGACCTA
CGGCGTTGCGCGCCGTCGTTTGACCGGCCACTCTCACTTCGTGCAGGACG
TCGTCCTCTCCTCGGACGGCCAGTTCGCTCTCTCCGGCTCCTGGGACGGC
GAGCTCCGCCTCTGGGATTTGGCCGAGGGCAAATCCGCCCGCAGGTTCGT
CGGCCACACTAAGGACGTTCTCTCCGTCGCCTTCTCGATCGACAACCGTC
AGATTGTATCGGCCTCTCGTGACCGTACGATCAAGTTGTGGAACACGCTC
GGCGAGTGCAAGTACACGATTCAAGAGGGAGACGCTCACACTGAGTGGGT
TTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCCG
CCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCTT
AAGGCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGTC
GCCGGATGGTTCGTTGTGTGCCAGTGGAGGGGA
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