DN617334

Overview
NameDN617334
Unique NameDN617334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WSB1_MOUSE (WD repeat and SOCS box-containing protein 1 OS=Mus musculus GN=Wsb1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 57/210 (27.14%), Postives = 92/210 (43.81%), Query Frame = 2
Query:   35 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-----------LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            H +MV  +    D S ++V+ASRDK++ VW L  +     V R     H ++V     S D     S      + LW++ +    R+  GH  DV++  FS D   + +AS D  + +W+            L      I  G A+  WV  V FS + L   + S + D+ V+ W +  +C ++     +       A S DGS+ A+G
Sbjct:  169 HIEMVRDLTFAPDGSLLLVSASRDKTLRVWDLKDDGNMVKVLR----AHQNWVYSCAFSPDCSMLCSVGASKAVFLWNMDKYTMIRKLEGHHHDVVACDFSPDGALLATASYDTRVYVWDPHNGDLLMEFGHLFPSPTPIFAGGANDRWVRAVSFSHDGLH--VASLADDKMVRFWRIDEDCPVQVAPLSNG---LCCAFSTDGSVLAAG 369          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WDR37_XENTR (WD repeat-containing protein 37 OS=Xenopus tropicalis GN=wdr37 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 41/140 (29.29%), Postives = 70/140 (50.00%), Query Frame = 2
Query:  194 QDVVLSSD----GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVS 601
            Q VV+++D    G+ A++ SWD    L+D+   +      GH +++         R +V++SRD T +LW+      +++     HT+ V+   F   T+   +VS S DRTVKVW+L N +           +N ++VS
Sbjct:  281 QGVVIAADWLVGGKQAVTASWDRTANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVF---TVGDNVVSGSDDRTVKVWDLKNMRSPIATIRTDSAINRISVS 417          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: PRP46_EMENI (Pre-mRNA-splicing factor prp46 OS=Emericella nidulans GN=prp46 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 49/197 (24.87%), Postives = 87/197 (44.16%), Query Frame = 2
Query:   14 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSP 604
            L   +  H   V ++A    N++   + + D++I +W+L       G  R  LTGH   V+ + +S    +  S   D  ++ WDL   K  R + GH   V ++A       +V+  RD   ++W+        +  G  HT  V+ V+       P +++ S D TV++W+L+  K    L  H   + ++A  P
Sbjct:  135 LMRVISGHLGWVRSLAVE-PNNEWFASGAGDRTIKIWNLAT-----GALRLTLTGHISTVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYTLALHPRLDLLVTGGRDGVARVWDMRTRSNIHVLSG--HTGTVADVQC--QEADPQVITGSLDATVRLWDLAAGKTMGVLTHHKKGIRSLATHP 321          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: CWF17_SCHPO (Cell cycle control protein cwf17 OS=Schizosaccharomyces pombe GN=cwf17 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 57/215 (26.51%), Postives = 94/215 (43.72%), Query Frame = 2
Query:    2 EGLVLKGT---------MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSV-AFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGS 613
            EG VL+ T         M  HT  V  +A    +     +   D+ I++W++  + K YGV    L G    + D+  S D +     S D  L  WD   G+  R+  GH   V ++    + +  + S S D T+K+W++   +C  TI+E       ++ V  +    Q  +     D  +K+W+L N      L GH   + ++A+S DGS
Sbjct:   29 EGSVLQRTSDLNVPNLQMFGHTAEVL-VARFDPSGSYFASGGMDRQILLWNVFGDVKNYGV----LNGCKGAITDLQWSRDSRVVYCSSSDTHLMSWDAVSGQKIRKHKGHAGVVNALDVLKVGSELLTSVSDDCTMKVWDSRSKDCIKTIEEKYP----LTAVAIAQQGTQ--VFIGGIDGAIKIWDLRNNHCSHVLKGHKDIITSLAISKDGS 232          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: CIAO1_CHLRE (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_130093 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 54/200 (27.00%), Postives = 95/200 (47.50%), Query Frame = 2
Query:   20 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTK---EEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEG--KSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK--LKATLAG-HTGYVNTV 592
            G +  H D V  +A      DM+ + S DK++ +W   +    E+ Y  A      H+  ++ V  S  G+   + S+D  + +W+L+ G  +      GH  +V  VA++ D R I +  RDR++ +W ++ G     +     H++ V  V + P+     +VSA +D T+K+W     +     TL G  TG+ +TV
Sbjct:   10 GALSGHDDRVWNVAWS-PQGDMLASCSGDKTVRIWSRRQPRPSEQWYCSAILDQC-HTRTIRSVAWSPTGRALATASFDATVAVWELSSGVWEQVAELEGHENEVKCVAWNPDGRLIATCGRDRSVWIWESMPGREFECVDVKQGHSQDVKAVTWHPS--GELLVSAGYDDTIKLWTYDGDEWGCAQTLGGTGTGHESTV 205          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WDR37_MOUSE (WD repeat-containing protein 37 OS=Mus musculus GN=Wdr37 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 46/164 (28.05%), Postives = 78/164 (47.56%), Query Frame = 2
Query:   68 IDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD----GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 547
            I   D I  + +D+  I   ++ +  T  V    L  H    Q VV+++D    G+  ++ SWD    L+D+   +      GH +++         R +V++SRD T +LW+      +++     HT+ V+   F   T+   +VS S DRTVKVW+L N +
Sbjct:  245 ISGEDEIECSDKDEPDIDGDVSSDCPTVRVPLTSLKSH----QGVVIAADWLVGGKQVVTASWDRTANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVF---TVGDNVVSGSDDRTVKVWDLKNMR 401          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: PRP19_CAEEL (Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 50/188 (26.60%), Postives = 86/188 (45.74%), Query Frame = 2
Query:   80 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRD-----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            ++ +T   DK+++++   KE+       +   GH+  +  VVL  D   A+S S D  +R+W   +  S      H   V  ++ +     I+SAS D       I+   +L  CK +++ G      V  + F P+ L     + + D  VK+W+L N  + A   GHT  V ++A S +G   A+G
Sbjct:  222 NLSLTGGIDKTVVLYDYEKEQ-----VMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPVTDISLNASGDYILSASDDSYWAFSDIRSGKSL--CKVSVEPGSQIA--VHSIEFHPDGL--IFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATG 398          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: NUDF_GIBZE (Nuclear distribution protein PAC1 OS=Gibberella zeae GN=PAC1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 51/168 (30.36%), Postives = 74/168 (44.05%), Query Frame = 2
Query:  152 GVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFS--IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPT------IVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASGG 631
            G  R  L  H   +  V          SG  D  +++WD   G+  R   GHTK VL + +     +  + S S D TIKLW+   E +  I+    H   VS VRF P+           + SAS D TV++W+++      T+ GH  ++  V+ S DG    S G
Sbjct:  108 GPPRHVLQSHRTPINCVAFHPIFSSIASGDEDATIKIWDWEFGELERTVKGHTKAVLDLDYGGPKGHTLLASCSSDLTIKLWDPANEYQ-NIRTLPGHDHSVSAVRFIPSGAPGAPLSGNLLASASRDVTVRIWDVTTGYCVKTIRGHADWIRDVSPSLDGKYLLSTG 274          

HSP 2 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 52/203 (25.62%), Postives = 93/203 (45.81%), Query Frame = 2
Query:   74 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFV--GHTKDVLSVAF---------------------SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS---NCKLKATLAGHTGYVNTVAVSP 604
            + +++ +ASRD ++ +W +T      G   + + GH+ +++DV  S DG++ LS   D  +RLWD++      + V  GH   V    F                     S     + +  RD+TI+LW+  G C  T+     H  WV  + F P+     ++S S D+T++ W+LS    C +K     H  ++ ++  +P
Sbjct:  224 SGNLLASASRDVTVRIWDVTT-----GYCVKTIRGHADWIRDVSPSLDGKYLLSTGNDRTVRLWDISVPNPEAKLVMIGHEHFVECCTFAPPAAYSHLATLAGVKKPPPASSTAEFMATGGRDKTIRLWDGRGNCIKTLI---GHDNWVRGLVFHPSG--KFLLSVSDDKTIRCWDLSQEGKC-VKTVEGSHEHFITSLRWAP 415          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: WDR12_DANRE (Ribosome biogenesis protein wdr12 OS=Danio rerio GN=wdr12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 56/197 (28.43%), Postives = 90/197 (45.69%), Query Frame = 2
Query:   59 ATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRR-----LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKA-TLAGHTGYVNTVAVSPDGSLCASG 628
            A P +  D I   +R +        K++KT  +   R     L+GH+  V  V L  D     S SWD  +RLWD   G       G +K    +++S   R++ S S DR ++LW+    +    +    +H  WV+ VR++P+  +  +VS S D  VK+W+  +CK     LA H   V     + +G + + G
Sbjct:  218 AVPTEEEDEIEEPNRPR--------KKQKTEQMGLTRTPLMTLSGHNEAVSSV-LWMDADELCSASWDHTIRLWDAETGGQKSTLSG-SKVFNCISYSPLCRRLASGSTDRHVRLWDPRSKDGSLVLLSLTSHNGWVTAVRWAPSH-EHQLVSGSLDNVVKLWDTRSCKAPLYDLAAHEDKVLCADWTENGLILSGG 403          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: PWP2_YEAST (Periodic tryptophan protein 2 OS=Saccharomyces cerevisiae GN=PWP2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 57/206 (27.67%), Postives = 90/206 (43.69%), Query Frame = 2
Query:    2 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSID--NRQIVSASRDR-TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDG 610
            E  +LK   + H D   ++A   D S  +VTAS D  I VW +T      G        H+  V  V  +  GQ   S S DG +R WDL   ++ R F G T+ +     ++D     + + S D   I +W+   +    +     H   VSC+ FS       + SASWD+T+++W++     +         V  +++ PDG
Sbjct:  335 ESYILK--QQGHFDSTNSLAYSPDGS-RVVTASEDGKIKVWDITS-----GFCLATFEEHTSSVTAVQFAKRGQVMFSSSLDGTVRAWDLIRYRNFRTFTG-TERIQFNCLAVDPSGEVVCAGSLDNFDIHVWSV--QTGQLLDALSGHEGPVSCLSFSQE--NSVLASASWDKTIRIWSIFGRSQQVEPIEVYSDVLALSMRPDG 527          
The following BLAST results are available for this feature:
BLAST of DN617334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
WSB1_MOUSE1.396e-1127.14WD repeat and SOCS box-containing protein 1 OS=Mus... [more]
WDR37_XENTR1.396e-1129.29WD repeat-containing protein 37 OS=Xenopus tropica... [more]
PRP46_EMENI1.396e-1124.87Pre-mRNA-splicing factor prp46 OS=Emericella nidul... [more]
CWF17_SCHPO1.823e-1126.51Cell cycle control protein cwf17 OS=Schizosaccharo... [more]
CIAO1_CHLRE1.823e-1127.00Probable cytosolic iron-sulfur protein assembly pr... [more]
WDR37_MOUSE2.381e-1128.05WD repeat-containing protein 37 OS=Mus musculus GN... [more]
PRP19_CAEEL2.381e-1126.60Pre-mRNA-processing factor 19 homolog OS=Caenorhab... [more]
NUDF_GIBZE2.381e-1130.36Nuclear distribution protein PAC1 OS=Gibberella ze... [more]
WDR12_DANRE3.109e-1128.43Ribosome biogenesis protein wdr12 OS=Danio rerio G... [more]
PWP2_YEAST3.109e-1127.67Periodic tryptophan protein 2 OS=Saccharomyces cer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617334 ID=DN617334; Name=DN617334; organism=Citrus sinensis; type=EST; length=633bp
TGAAGGTCTCGTTCTCAAAGGAACCATGCGCGCCCACACCGACATGGTAA
CGGCGATCGCCACCCCAATCGACAACTCTGACATGATCGTGACGGCCTCG
CGTGACAAGTCCATCATTGTCTGGCACCTCACTAAGGAGGAAAAGACCTA
CGGCGTTGCGCGCCGTCGTTTGACCGGCCACTCTCACTTCGTGCAGGACG
TCGTCCTCTCCTCGGACGGCCAGTTCGCTCTCTCCGGCTCCTGGGACGGC
GAGCTCCGCCTCTGGGATTTGGCCGAGGGCAAATCCGCCCGCAGGTTCGT
CGGCCACACTAAGGACGTTCTCTCCGTCGCCTTCTCGATCGACAACCGTC
AGATTGTATCGGCCTCTCGTGACCGTACGATCAAGTTGTGGAACACGCTC
GGCGAGTGCAAGTACACGATTCAAGAGGGAGACGCTCACACTGAGTGGGT
TTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCCG
CCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCTT
AAGGCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGTC
GCCGGATGGTTCGTTGTGTGCCAGTGGAGGGGA
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