DN617334

Overview
NameDN617334
Unique NameDN617334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13759 contig Csv1_Contig13759:80..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: UTP15_BOVIN (U3 small nucleolar RNA-associated protein 15 homolog OS=Bos taurus GN=UTP15 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 48/141 (34.04%), Postives = 75/141 (53.19%), Query Frame = 2
Query:  215 DGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSP-NTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASGG 631
            DG+  ++GS DG ++L+D++     R+F GHTK V SV F+ D   +VS + D T+KLW+     +  T +E   H+++V C   S  NT     V+ S+D TVK+++ +          H   V +V + P G L  S G
Sbjct:   91 DGRLLVAGSEDGGVQLFDISGRAPLRQFEGHTKAVHSVDFTADKYHVVSGADDYTVKLWDIPNSKEILTFKE---HSDYVRCGCASKLNT--DLFVTGSYDHTVKMFD-ARTNQSVISVEHGQPVESVLLFPSGGLLVSAG 225          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: PLAP_XENLA (Phospholipase A-2-activating protein OS=Xenopus laevis GN=plaa PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 2
Query:   23 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCV 460
            T++ HT  V A+   +    +++T S DKSI +W   + E T+        GH   V+ +   +D +F LS S D  +R W L  G+  + + GHT  + SV    +++  V+ S DR+I++W   GEC  TI+   A + W  CV
Sbjct:  152 TLQGHTAAVWAVKI-LPEQGLMLTGSADKSIKLWKAGRCEMTF-------LGHEDCVRGLATINDTEF-LSCSNDASVRRW-LITGECLQIYYGHTNYIYSVCLFPNSQDFVTTSEDRSIRIWRK-GECTQTIRL-PAQSVWCCCV 285          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: GBB1_DROME (Guanine nucleotide-binding protein subunit beta-1 OS=Drosophila melanogaster GN=Gbeta13F PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 46/185 (24.86%), Postives = 85/185 (45.95%), Query Frame = 2
Query:   74 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYVNTVAVSPDGSLCASG 628
            + + IVT+S D S  +W +       G+      GH+  V  + L+   +  +SG+ D   +LWD+ EG   + F GH  D+ +V F  + +   + S D T +L++   + +  +   D     ++ V FS +     +++   D    VW+    +    LAGH   V+ + V+ +G   A+G
Sbjct:  153 DDNQIVTSSGDMSCGLWDIET-----GLQVTSFLGHTGDVMALSLAPQCKTFVSGACDASAKLWDIREGVCKQTFPGHESDINAVTFFPNGQAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKS--GRLLLAGYDDFNCNVWDTMKAERSGILAGHDNRVSCLGVTENGMAVATG 330          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: FBW10_HUMAN (F-box/WD repeat-containing protein 10 OS=Homo sapiens GN=FBXW10 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 44/137 (32.12%), Postives = 68/137 (49.64%), Query Frame = 2
Query:  176 GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKATLAGHTGYV 583
            GH+  V+ + L  +  F LSGS+D  +R WDL  G   R F GH   +      +   ++VS  RD  +K+W+   G+C  T +    H + +   R +       IVS+     VKVW+++  +L  TL+GH G V
Sbjct:  451 GHAGSVRALFLCEEENFLLSGSYDLSIRYWDLKSGVCTRIFGGHQGTI--TCMDLCKNRLVSGGRDCQVKVWDVDTGKCLKTFR----HKDPILATRIN----DTYIVSSCERGLVKVWHIAMAQLVKTLSGHEGAV 577          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 40/130 (30.77%), Postives = 66/130 (50.77%), Query Frame = 2
Query:  167 RLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLKA 556
            R   H   V+ V   +     +SG  D ++++W+    +     +GH   + +V F  +N  IVSAS D+TI++WN       ++  G  H  +V C  F P   +  +VSAS D+TV+VW++   K K+
Sbjct:   46 RFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTG--HNHYVMCASFHPK--EDLVVSASLDQTVRVWDIGALKKKS 171          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: HAT2_USTMA (Histone acetyltransferase type B subunit 2 OS=Ustilago maydis GN=HAT2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 50/158 (31.65%), Postives = 85/158 (53.80%), Query Frame = 2
Query:   86 IVTASRDKSIIVWHLTKEEKTYGVAR--RRLTGHSHFVQDVVLSSDGQFALSGSW--DGELRLWDLAEGKSARRF--VGHTKDVLSVAFSIDNRQI-VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS 538
            I+ AS D ++  W +    K     +     TGH+  V+DV   +  + +L GS   D +L +WD+ E  SA ++    HT +V ++AFS +N  I V+ S D+++ +W+ L   K  +   ++HT+ +  V +SP+     + SAS DR V +W+LS
Sbjct:  257 ILAASEDTTVCHWDINNYTKPNNTLQPSATYTGHTAIVEDVAWHNHHE-SLFGSVGDDRQLLIWDIREPASAPKYRVEAHTGEVNALAFSPENENILVTGSSDKSVGVWD-LRNLKVKLHSLESHTDEILSVCWSPHHAT-VLASASADRRVNLWDLS 411          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: CIAO1_RAT (Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Rattus norvegicus GN=Ciao1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 57/214 (26.64%), Postives = 98/214 (45.79%), Query Frame = 2
Query:    2 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT-GHSHFVQDVVLSSDGQFALSGSWDGELRLW--DLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL--SNCKLKATLAGHTGYVNTVAVSPDGSLCAS 625
            + LVL+  + AH D             ++ +   D+ I +W     E    + +  L+ GH   V+ V  S  G +  S S+D    +W  +  + +      GH  +V SVA++     + + SRD+++ +W    E +Y  +   ++HT+ V  V + P+  Q  + SAS+D TVK++     +    ATL GH   V ++A  P G   AS
Sbjct:    3 DALVLQSRVPAHPDSRCWFLAWNPTGTLLASCGGDRKIRIWGT---EGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS--QELLASASYDDTVKLYQEEGDDWVCCATLEGHESTVWSIAFDPSGQRLAS 211          
BLAST of DN617334 vs. ExPASy Swiss-Prot
Match: CIAO1_MOUSE (Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Mus musculus GN=Ciao1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 57/214 (26.64%), Postives = 98/214 (45.79%), Query Frame = 2
Query:    2 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT-GHSHFVQDVVLSSDGQFALSGSWDGELRLW--DLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL--SNCKLKATLAGHTGYVNTVAVSPDGSLCAS 625
            + LVL+  + AH D          +  ++ +   D+ I +W     E    + +  L+ GH   V+ V  S  G +  S S+D    +W  +  + +      GH  +V SVA++     + + SRD+++ +W    E +Y  +    +HT+ V  V + P+  Q  + SAS+D TVK++     +    ATL GH   V ++A  P G   AS
Sbjct:    3 DSLVLQSRVPAHPDSRCWFLAWNPSGTLLASCGGDRKIRIWGT---EGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLSSHTQDVKHVVWHPS--QELLASASYDDTVKLYQEEGDDWVCCATLEGHESTVWSIAFDPSGQRLAS 211          
The following BLAST results are available for this feature:
BLAST of DN617334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
UTP15_BOVIN6.927e-1134.04U3 small nucleolar RNA-associated protein 15 homol... [more]
PLAP_XENLA6.927e-1132.19Phospholipase A-2-activating protein OS=Xenopus la... [more]
GBB1_DROME6.927e-1124.86Guanine nucleotide-binding protein subunit beta-1 ... [more]
FBW10_HUMAN6.927e-1132.12F-box/WD repeat-containing protein 10 OS=Homo sapi... [more]
COPA2_ARATH6.927e-1130.77Coatomer subunit alpha-2 OS=Arabidopsis thaliana G... [more]
HAT2_USTMA9.047e-1131.65Histone acetyltransferase type B subunit 2 OS=Usti... [more]
CIAO1_RAT9.047e-1126.64Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_MOUSE9.047e-1126.64Probable cytosolic iron-sulfur protein assembly pr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617334 ID=DN617334; Name=DN617334; organism=Citrus sinensis; type=EST; length=633bp
TGAAGGTCTCGTTCTCAAAGGAACCATGCGCGCCCACACCGACATGGTAA
CGGCGATCGCCACCCCAATCGACAACTCTGACATGATCGTGACGGCCTCG
CGTGACAAGTCCATCATTGTCTGGCACCTCACTAAGGAGGAAAAGACCTA
CGGCGTTGCGCGCCGTCGTTTGACCGGCCACTCTCACTTCGTGCAGGACG
TCGTCCTCTCCTCGGACGGCCAGTTCGCTCTCTCCGGCTCCTGGGACGGC
GAGCTCCGCCTCTGGGATTTGGCCGAGGGCAAATCCGCCCGCAGGTTCGT
CGGCCACACTAAGGACGTTCTCTCCGTCGCCTTCTCGATCGACAACCGTC
AGATTGTATCGGCCTCTCGTGACCGTACGATCAAGTTGTGGAACACGCTC
GGCGAGTGCAAGTACACGATTCAAGAGGGAGACGCTCACACTGAGTGGGT
TTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCCG
CCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCTT
AAGGCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGTC
GCCGGATGGTTCGTTGTGTGCCAGTGGAGGGGA
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