DN617328

Overview
NameDN617328
Unique NameDN617328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:23..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_METMP (30S ribosomal protein S3Ae OS=Methanococcus maripaludis GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 52/194 (26.80%), Postives = 87/194 (44.85%), Query Frame = 1
Query:  139 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 720
            WYDI  P  F     G  ++ +T     A+  L  R+ E+SL DL NE      ++  + + V G N  + F G   T + L+S VR+  + I A V+V+T D F +R+  +  T            A+     +IR +M +I+   A        V   +   +G +I      ++PL+ V I K ++++  K
Sbjct:   24 WYDIYTPQSF-----GGDVIGQTPANDPAN--LIGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVEVRTKDGFKVRVKALVLT---------AVRARDHHKTEIRVRMEQIIKEMAKETPFAEFVHAMLMGGLGSKIYGDCKKMFPLKRVEIFKSEVIEFGK 201          
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_IGNH4 (30S ribosomal protein S3Ae OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 52/193 (26.94%), Postives = 82/193 (42.49%), Query Frame = 1
Query:  139 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 717
            WY+I  P  F   +VG+T     +  K+    +   +++++ GD      H Y  +++   D +     T F G     D +RSL R+  + IE   DV T D + LR+    FT             QTSQ R IR+  +E++        L  ++   +   I  EI      IYP++   I K K+L  P
Sbjct:   18 WYEIITPDVFNNVSVGQT--PADEAWKLIGRTVDTTLYDIT-GDFTYVHVHVY--LQINKVDEEALKAYTIFKGHELARDYIRSLTRRKSSKIEGIFDVWTKDGYGLRITVDTFT---------AYRCQTSQKRAIRKIQKEVIEEMVPQMTLDEVINAMLFGDIAEEISNRARKIYPIRRTEIYKSKVLYMP 196          
The following BLAST results are available for this feature:
BLAST of DN617328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
RS3A_METMP2.361e-1126.8030S ribosomal protein S3Ae OS=Methanococcus maripa... [more]
RS3A_IGNH43.084e-1126.9430S ribosomal protein S3Ae OS=Ignicoccus hospitali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617328 ID=DN617328; Name=DN617328; organism=Citrus sinensis; type=EST; length=728bp
CGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCTGCAC
AAACATGGCCGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAG
GCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATC
AAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTAC
CCGGACTCAGGGTACCAAGATTGCATCAGAAGGACTCAAACACAGAGTGT
TTGAGGTATCACTAGGTGATCTTCTCAACGAAGAAGAGCACGCTTACAGG
AAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTGTTGACTAA
CTTCTGGGGCATGAGTTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGA
AGTGGCATACCTTGATTGAAGCTTATGTGGATGTCAAGACCACTGATAAC
TTCACATTGAGATTGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCA
GGTTAAGAGGACTTGCTATGCACAGACCAGCCAGATTAGACAGATTCGCC
GCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCTTGTGATCTTAAG
AGCTTGGTCGAAAAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAA
GGCAACCTCAAGCATATATCCCTTACAAAATGTGTTCATTCGCAAAGTGA
AGATCCTGAAAGCTCCCAAGTTTGATCT
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