DN617328

Overview
NameDN617328
Unique NameDN617328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:23..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.079e-64
Identity = 125/197 (63.45%), Postives = 149/197 (75.63%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            +WYDIKAP+ F  R VGKTL+ RTQGTKIASEGLK RVFEVSLGDL N  E  +RK +L AEDVQGKNVLTNF  MS T DKL S+V+KWHTLIEA   VKTTD +TLR+F I FTK+  NQVK+T Y +TS+IR+IR +M   +  +   CDLK +V K I + IG++IEK  S +YPLQ V+IRKVKI+K PK D
Sbjct:   27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL-NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSANQVKKTSYTKTSKIRKIRSEMISCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKID 222          
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_BABBO (40S ribosomal protein S3a OS=Babesia bovis GN=BBOV_III001480 PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.841e-64
Identity = 115/197 (58.38%), Postives = 157/197 (79.70%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            +WY +KAP  F VRN G+TLV++TQGTK+A++GL+ R++EVSL DL  +E+ +YRKI+L  ED+QG+N LTNF G S T DKL SL+RK ++LIEA+ DVKTTD +TLR+FCIG+TKR P Q+K TCY ++S+ R +RRKM E+M  +A++  ++ +V+K I E IG+EIEKA  S++PLQNV IRK+K+LK PKFD
Sbjct:   28 EWYTLKAPVMFHVRNFGQTLVSKTQGTKLATDGLRGRIYEVSLADLNADEDQSYRKIKLCCEDIQGRNCLTNFHGTSVTRDKLCSLIRKNYSLIEAFTDVKTTDGYTLRMFCIGYTKRRPGQLKSTCYIRSSRTRVVRRKMIEVMQREASTTSMREVVKKIIPESIGKEIEKACKSVFPLQNVLIRKIKVLKKPKFD 224          
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.841e-64
Identity = 118/197 (59.90%), Postives = 154/197 (78.17%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            +W+DIKAPS F  R VGKTL+ R+ G K A++GLK RV EV L DL   E+H+ RK++LR ++VQGKN+LTNF G+ FTTDKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I PLQN+ IRKVK+LK PKFD
Sbjct:   28 EWFDIKAPSTFENRAVGKTLINRSTGLKNAADGLKGRVVEVCLADLQGSEDHSSRKVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFD 224          
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.841e-64
Identity = 118/197 (59.90%), Postives = 154/197 (78.17%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            +W+DIKAPS F  R VGKTL+ R+ G K A++GLK RV EV L DL   E+H+ RK++LR ++VQGKN+LTNF G+ FTTDKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I PLQN+ IRKVK+LK PKFD
Sbjct:   28 EWFDIKAPSTFENRAVGKTLINRSTGLKNAADGLKGRVVEVCLADLQGSEDHSSRKVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFD 224          
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.404e-64
Identity = 126/197 (63.96%), Postives = 152/197 (77.16%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            +WYDIKAPS F V+++GKTLV RTQGTKIASEGLK RV+EVSLGDL N  E  +RK+RL  EDVQG+  LTNF GM  T DKL S+V+KWHTLIEA V VKT+D + LRLFCIGFTK+   Q+K+T YA++S+IRQIR KM E M  +    DLK +  K + + IG++IEKA S IYPLQ+V IRKVKILK PKF+
Sbjct:   26 EWYDIKAPSMFNVQHIGKTLVNRTQGTKIASEGLKGRVYEVSLGDL-NNAESEFRKMRLICEDVQGRTCLTNFHGMRLTRDKLCSIVKKWHTLIEANVAVKTSDGYLLRLFCIGFTKKNARQLKKTSYAKSSKIRQIRAKMVEYMQKEVQGSDLKDVCHKLVPDSIGKDIEKACSYIYPLQDVCIRKVKILKKPKFE 221          
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 3.140e-64
Identity = 119/197 (60.41%), Postives = 151/197 (76.65%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            DWYDIKAP+ F  RNVGKT V R+QG K A + LK R+ E SL DL  ++E AYRK +L+ + +QG+  LTNF+GM FT+DKLRSLVRKW +LIEA+ DVKTTD + LR+F I FTK+  NQVK+  YA++S IR IR+KM EI+  +A SCDL+  V K I EVIGRE+EKAT  I+PL++V++RKVK+LKAPK D
Sbjct:   27 DWYDIKAPTFFENRNVGKTFVNRSQGLKNADDSLKGRIVEASLADLNKDDEQAYRKFKLKVDGIQGRTCLTNFYGMDFTSDKLRSLVRKWQSLIEAHQDVKTTDGYLLRVFVIAFTKKRANQVKKNTYAKSSHIRAIRQKMFEIVQREANSCDLREFVAKLIPEVIGREVEKATQGIFPLKDVYVRKVKVLKAPKDD 223          
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_THEPA (40S ribosomal protein S3a OS=Theileria parva GN=TP03_0697 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.140e-64
Identity = 118/197 (59.90%), Postives = 154/197 (78.17%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            +WY++KAP  F VRN G+TLVT+T GTK+A++GLK RVFE+SL DL  +E+ AYRKI+L  EDVQG+N LT+F G S T DKL SL+RK ++LIEA+ DVKT D + LRLFC+G+TKR P Q+K TCY +TS++R I +KM  +M  +A++  LK LV+K I E IG+EIEKA  SI+PLQNV +RK+K+LK PKFD
Sbjct:   28 EWYNLKAPVTFNVRNFGQTLVTKTVGTKLATDGLKGRVFEMSLADLNADEDQAYRKIKLSCEDVQGRNCLTDFHGTSVTRDKLCSLIRKNYSLIEAFADVKTLDGYNLRLFCVGYTKRRPGQLKSTCYVRTSKVRLIHKKMVSVMTNEASNSTLKELVKKVIPESIGKEIEKACKSIFPLQNVLVRKIKVLKKPKFD 224          
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_CAEEL (40S ribosomal protein S3a OS=Caenorhabditis elegans GN=rps-1 PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 3.140e-64
Identity = 125/197 (63.45%), Postives = 149/197 (75.63%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            +WYDIKAP+ F  R VGKTL+ RTQGTKIASEGLK RVFEVSLGDL N  E  +RK +L AEDVQGKNVLTNF  MS T DKL S+V+KWHTLIEA   VKTTD +TLR+F I FTK+  NQVK+T Y +TS+IR+IR +M   +  +   CDLK +V K I + IG++IEK  S +YPLQ V+IRKVKI+K PK D
Sbjct:   27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL-NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVD 222          
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_ARTSF (40S ribosomal protein S3a OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.355e-64
Identity = 122/199 (61.31%), Postives = 152/199 (76.38%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEE--HAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            DWYD+KAPS F  R++GKTLV RT GTKIAS+ LK RVFEVSL DL  E E   ++RK RL AE+VQG+ +LTNF GM FTTDKLRSLV+KW TLIE  VDVKTTD++ LR+FCIGFT++     ++TCYAQ +Q+R IR+KM EI+  + +S DLK  V K I + I ++IEK+  SIYP+  V+IRKVK+LK PKFD
Sbjct:   29 DWYDVKAPSLFTNRDIGKTLVNRTAGTKIASDSLKGRVFEVSLADLQGESEAERSFRKFRLIAEEVQGRYLLTNFHGMDFTTDKLRSLVKKWQTLIECSVDVKTTDSYLLRVFCIGFTQKDQRSQRKTCYAQHTQVRAIRKKMTEIITKEISSGDLKEAVSKLIPDSIAKDIEKSCHSIYPIHEVYIRKVKVLKKPKFD 227          
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.994e-64
Identity = 119/197 (60.41%), Postives = 150/197 (76.14%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            +WYDIKAP+ F  RNVGKTL+ ++ G K A +GLK RV EVSL DL   E+H+++KI+LR ++VQGKN+LTNF G  FT+DK+RSLVRKW +L+EA V VKT D++ LR+FCI FT+R  NQ+K+T YAQ+SQ+  IR+KM EIM  + ++  L  L  K I EVIGREIEKA   IYPLQNV IRKVK+LK  KFD
Sbjct:   28 EWYDIKAPTTFENRNVGKTLINKSTGLKNAVDGLKGRVVEVSLADLQGSEDHSFKKIKLRVDEVQGKNLLTNFHGFDFTSDKVRSLVRKWQSLVEANVTVKTADDYVLRIFCIAFTRRHQNQIKKTTYAQSSQLSAIRKKMVEIMQREVSNVTLAQLTSKLIPEVIGREIEKAAEGIYPLQNVHIRKVKVLKQAKFD 224          
The following BLAST results are available for this feature:
BLAST of DN617328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
RS3A_CAEBR1.079e-6463.4540S ribosomal protein S3a OS=Caenorhabditis briggs... [more]
RS3A_BABBO1.841e-6458.3840S ribosomal protein S3a OS=Babesia bovis GN=BBOV... [more]
RS3A2_DEBHA1.841e-6459.9040S ribosomal protein S1-B OS=Debaryomyces hanseni... [more]
RS3A1_DEBHA1.841e-6459.9040S ribosomal protein S1-A OS=Debaryomyces hanseni... [more]
RS3A_BRUMA2.404e-6463.9640S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A_USTMA3.140e-6460.4140S ribosomal protein S1 OS=Ustilago maydis GN=RPS... [more]
RS3A_THEPA3.140e-6459.9040S ribosomal protein S3a OS=Theileria parva GN=TP... [more]
RS3A_CAEEL3.140e-6463.4540S ribosomal protein S3a OS=Caenorhabditis elegan... [more]
RS3A_ARTSF5.355e-6461.3140S ribosomal protein S3a OS=Artemia sanfranciscan... [more]
RS3A_PICPG6.994e-6460.4140S ribosomal protein S1 OS=Pichia pastoris (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617328 ID=DN617328; Name=DN617328; organism=Citrus sinensis; type=EST; length=728bp
CGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCTGCAC
AAACATGGCCGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAG
GCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATC
AAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTAC
CCGGACTCAGGGTACCAAGATTGCATCAGAAGGACTCAAACACAGAGTGT
TTGAGGTATCACTAGGTGATCTTCTCAACGAAGAAGAGCACGCTTACAGG
AAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTGTTGACTAA
CTTCTGGGGCATGAGTTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGA
AGTGGCATACCTTGATTGAAGCTTATGTGGATGTCAAGACCACTGATAAC
TTCACATTGAGATTGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCA
GGTTAAGAGGACTTGCTATGCACAGACCAGCCAGATTAGACAGATTCGCC
GCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCTTGTGATCTTAAG
AGCTTGGTCGAAAAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAA
GGCAACCTCAAGCATATATCCCTTACAAAATGTGTTCATTCGCAAAGTGA
AGATCCTGAAAGCTCCCAAGTTTGATCT
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