DN617310

Overview
NameDN617310
Unique NameDN617310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = -1
Query:  195 MAVYKVKLIGP-DGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV LI   +G     + PDD YILD+AE+AG++LPYSCRAGACSTCAG ++SG+VDQSD SFLDD+Q+E GYVLTC+AYP SDCVI THKE E
Sbjct:    1 MATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEE 97          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = -1
Query:  195 VYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 476
            VYKV L+  +G E   D PDD YILD AED G++LPYSCRAGACSTCAG +VSG+VDQSD SFLDD+Q+EKGYVLTC+AYP SD  I THKE +
Sbjct:    4 VYKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEED 97          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.290e-33
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ P+GE  E + PDD YILD AE+ G++LPYSCRAG+CS+CAG +VSG +DQSD SFLDD+QME+G+VLTC AYPKSD VI THKE E
Sbjct:    1 ATYKVKLVTPEGEV-ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.290e-33
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ P G++ EFD PDD YILD AE+ G++LPYSCRAG+CS+CAG +  G VDQSDGSFLDD QME+G+VLTC+A+P SD VI THKE E
Sbjct:    1 ATYKVKLVTPQGQQ-EFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.290e-33
Identity = 64/96 (66.67%), Postives = 77/96 (80.21%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV LI  +G     D PDD YILD+AE+AG++LPYSCRAGACSTCAG +V+G++DQSD SFLDD+Q+E GYVLTC+AYP SD  I THKE +
Sbjct:    1 MATYKVTLIDAEGTTTTIDCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEED 96          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.906e-33
Identity = 63/95 (66.32%), Postives = 79/95 (83.16%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ P G+  EF+ PDD YILD AE+ G++LPYSCRAG+CS+CAG + +G+VDQSDGSFLDD+Q+ +G+VLTC+AYP SD VI THKE E
Sbjct:    1 ATYKVKLVTPSGQPLEFECPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKNGNVDQSDGSFLDDDQIGEGWVLTCVAYPTSDVVIETHKEEE 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.906e-33
Identity = 70/96 (72.92%), Postives = 80/96 (83.33%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV LI PDGE + +DAPDD YILDSA DAG +LP SCRAGACSTCAG +VSG+VDQS+ SFLDD+Q+E GYVLTCIAYP+SD  I T+KE E
Sbjct:    1 MATYKVTLITPDGEVS-YDAPDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEE 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.906e-33
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKVKL+ PDG + EF+ P D YILD AE+ G++LPYSCRAG+CS+CAG +V G VDQSDGSFLDD Q+E G+VLTC+AYP SD VI THKE +
Sbjct:   52 MASYKVKLVTPDGTQ-EFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEED 146          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 5.101e-33
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV L+ PDGE    D P+D YILD AE+ G++LP+SCRAGACSTCAG ++ G VDQSD SFLDD+Q+EKG+VLTC+AYP+SDC I TH+E E
Sbjct:    1 MATYKVTLVRPDGETT-IDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEE 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.101e-33
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ PDG   EFD PDD YILD AE+ G ELPYSCRAG+CS+CAG + +G+VDQSDG+FLDD+QM  G+VLTC+AYP+SD +I THKE E
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEE 94          
The following BLAST results are available for this feature:
BLAST of DN617310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_MASLA1.342e-3369.07Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER1_NOSMU1.342e-3370.21Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER_HORVU2.290e-3369.47Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]
FERA_ALOMA2.290e-3368.42Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER1_APHFL2.290e-3366.67Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FERB_ALOMA3.906e-3366.32Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER1_SYNP23.906e-3372.92Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER1_PEA3.906e-3367.71Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER_SYNLI5.101e-3366.67Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]
FER_SCOJA5.101e-3368.42Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617310 ID=DN617310; Name=DN617310; organism=Citrus sinensis; type=EST; length=563bp
TTTTTTCTCTCTACCATATGTTGCATATCATAAACATGAAAGACTTAACA
CCAAATGGTAATGAAAAAGTTCATCGTCACAAGTGAAATGGAAAGCATTT
GTTCAGACCGACTCACAATGATCTACTGCTTTAGCACAAATAGAAAGCAC
AAAGCAGAAAGCAAAAGCCAAGATCATAACATTATTTAGTTAAGTTCAGA
TTCCTTGTGTGTATAAATCACACAATCTGATTTTGGATATGCAATGCATG
TAAGGACATAACCTTTCTCCATCTGGTTATCATCAAGGAATGATCCATCT
GATTGGTCAACAGAGCCTGAAACCATCAGGCCAGCGCAAGTAGAGCAGGC
ACCAGCGCGGCATGAGTAGGGGAGCTCCATTCCGGCATCTTCAGCAGAGT
CGAGGATGTAAGCATCGTCGGGGGCATCAAACTCGTTTTCCTCTCCATCT
GGTCCAATTAGTTTCACTTTGTAAACTGCCATTGCAGATACTTTGAATGA
AGAAGACTTNCAGCCAAAAGCTTTTGAAACACTCCTGGAAACCAAGGAAC
GGGGGCTCTTGAC
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