DN617310

Overview
NameDN617310
Unique NameDN617310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.328e-24
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEF-DAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSV-DQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV LI  +   N   +  DD  ILD+ E+AG++LP SCRAG+CSTCAG +VSG+  +Q D +FLDD+Q+  G+V+TC+AYP  DC I TH+ESE
Sbjct:    1 MATYKVTLINEEEGINAILEVADDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESE 98          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.645e-23
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = -1
Query:  195 YKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 473
            YKV L  PDG+   FD      ++D A +   +LP SC+AGACSTC G +VSG+VDQS+GSFLDD Q+E+GYVLTCIA P+SD VI THKE E
Sbjct:    2 YKVTLKTPDGDIT-FDVEPGERLIDIASEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDE 92          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.785e-23
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = -1
Query:  195 YKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 473
            YKV L  PDG+   FD      ++D   +   +LP SC+AGACSTC G +VSG+VDQS+GSFLDD Q+E+GYVLTCIA P+SD VI THKE E
Sbjct:    2 YKVTLKTPDGDIT-FDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDE 92          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 6.910e-22
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = -1
Query:  201 MAVYKVKLIGPDGE-ENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 482
            MA Y+V+LI    + +   +  ++  ILD AE+ G+ELP+SC +G+CS+C G +V G VDQSD  FLDD QM KG+ L C+ YP+S+C I TH+E
Sbjct:    1 MASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQE 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.025e-22
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = -1
Query:  201 MAVYKVKLIGPDGE-ENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 482
            MA Y+V+LI    + ++  +  +D  IL+ A + G+ELP+SC +G+CS+C G +V G VDQSD  FLDD QM KG+ L C+ YP+S+C I TH+E
Sbjct:    1 MATYQVRLINKKEDLDSTIEIDEDTTILEGAAENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQE 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.179e-21
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = -1
Query:  201 MAVYKVKLIGP-DGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 482
            MA Y+V+LI   +  +   +  ++  ILD AE+ G+ELP+SC +G+CS+C G +V G VDQSD  FLDD Q+ KG+ L C+ YP+S+C I TH+E
Sbjct:    1 MATYQVRLISKKENIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQE 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.223e-20
Identity = 42/96 (43.75%), Postives = 67/96 (69.79%), Query Frame = -1
Query:  198 MAVYKVKLIGPDGE-ENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 482
            MA Y+V+LI      +      +D  +L++AE+A ++LP+SC +GACS+C G +V G ++Q D +FLD+ Q+ KG+VL C+ YP++DC I TH+E+
Sbjct:    1 MATYQVRLINKKRNLDITLPVDEDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQEA 96          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.192e-19
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = -1
Query:  201 MAVYKVKLIGPDGE-ENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 482
            M  Y+V+LI      +      ++  ILD+AE   +ELP+SC++G+CS+C   +V G VDQS+  FLD+ QM KG+++ C++YP+SDC I TH+E
Sbjct:    1 MTTYQVRLINKKRAIDITIPVDENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQE 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.593e-18
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA Y+V++I   G+   F A  D  +LDSA+ AG++LP SC  G C+TCA  ++SG VDQ D   +     ++GY L C+AYP+SD  I THKE E
Sbjct:    1 MATYQVEVIY-QGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDE 95          
The following BLAST results are available for this feature:
BLAST of DN617310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_APHSA4.328e-2455.10Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_EQUTE1.645e-2360.22Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FER2_EQUAR4.785e-2359.14Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FERH_ANASP6.910e-2249.47Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FERH_FREDI9.025e-2248.42Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FERH_ANAVT1.179e-2148.42Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FER2_PLEBO2.223e-2043.75Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FERV_ANAVT4.192e-1944.21Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER2_SYNP61.593e-1846.88Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617310 ID=DN617310; Name=DN617310; organism=Citrus sinensis; type=EST; length=563bp
TTTTTTCTCTCTACCATATGTTGCATATCATAAACATGAAAGACTTAACA
CCAAATGGTAATGAAAAAGTTCATCGTCACAAGTGAAATGGAAAGCATTT
GTTCAGACCGACTCACAATGATCTACTGCTTTAGCACAAATAGAAAGCAC
AAAGCAGAAAGCAAAAGCCAAGATCATAACATTATTTAGTTAAGTTCAGA
TTCCTTGTGTGTATAAATCACACAATCTGATTTTGGATATGCAATGCATG
TAAGGACATAACCTTTCTCCATCTGGTTATCATCAAGGAATGATCCATCT
GATTGGTCAACAGAGCCTGAAACCATCAGGCCAGCGCAAGTAGAGCAGGC
ACCAGCGCGGCATGAGTAGGGGAGCTCCATTCCGGCATCTTCAGCAGAGT
CGAGGATGTAAGCATCGTCGGGGGCATCAAACTCGTTTTCCTCTCCATCT
GGTCCAATTAGTTTCACTTTGTAAACTGCCATTGCAGATACTTTGAATGA
AGAAGACTTNCAGCCAAAAGCTTTTGAAACACTCCTGGAAACCAAGGAAC
GGGGGCTCTTGAC
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