DN617310

Overview
NameDN617310
Unique NameDN617310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 9.620e-32
Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = -1
Query:  195 MAVYKVKLIGP-DGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA +KV LI   +G ++E + PDD YILD+AE+ G +LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE +
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEED 97          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_LYCCN (Ferredoxin OS=Lycium chinense PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.256e-31
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = -1
Query:  201 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 479
            A YKVKL+ PDG   EFD PDD YILD AE+ G ELPYSCRAG+CS+CAG + +G+VDQSDG+FLDD+Q+  G+VLTC+AYP+SD  I THKE
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKE 92          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.256e-31
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ PDG   EF+ PDD YILD AE+ G +LPYSCRAG+CS+CAG + +G+VDQSDG++LDD+QM  G+VLTC+AYP+SD  I THKE E
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.256e-31
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ PDG   EF+ PDD YILD AE+ G +LPYSCRAG+CS+CAG + +G+VDQSDG++LDD+QM  G+VLTC+AYP+SD  I THKE E
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.641e-31
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = -1
Query:  201 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 482
            MA YKVKL G +G +   D PDD YILD+AE+ G++LPYSCRAGACSTCAG + +GSVDQSD SFLDD+Q+  G+VLTC+AYP SDC I TH+E
Sbjct:    1 MATYKVKLSG-EGVDKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQE 93          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.641e-31
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = -1
Query:  195 MAVYKVKLIGP-DGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA +KV LI   +G  N  D PDD YILD+AE+ G +LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD  I THKE +
Sbjct:    1 MATFKVTLINEAEGTSNTIDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEED 97          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.143e-31
Identity = 63/95 (66.32%), Postives = 75/95 (78.95%), Query Frame = -1
Query:  201 MAVYKVKLIGP-DGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 482
            MA YKV LI   +G     D  DD YILD+AE+AG++LPYSCRAGACSTCAG + SG++DQSD SFLDD+Q+E GYVLTC+AYP SDC I TH+E
Sbjct:    1 MATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQE 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.799e-31
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKLI P+G   EF+ PDD YILDSAE+ G +LPYSCRAGACS+CAG + +G+VDQSD SFLDD+Q+ +G+VLTC+AYPKS+  I THKE +
Sbjct:    1 ATYKVKLITPEGPV-EFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDD 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.799e-31
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = -1
Query:  195 KVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 470
            KVKLI P+GEE E +  +D  IL+SAE+AG+ELPYSCR+G C TC G +VSG VDQS GSFL++ Q++KGY+LTCIA P  DCV+YTHK+S+
Sbjct:   55 KVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSD 146          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.799e-31
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ PDG   EF+ PDD YILD AE+ G ELPYSCRAG+CS+CAG + +G+VDQSDG+FLDD+Q+  G+VLTC+AYP+SD  I THKE +
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEED 94          
The following BLAST results are available for this feature:
BLAST of DN617310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_ANASO9.620e-3265.98Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER_LYCCN1.256e-3167.74Ferredoxin OS=Lycium chinense PE=1 SV=1[more]
FER_DATST1.256e-3165.26Ferredoxin OS=Datura stramonium PE=1 SV=1[more]
FER_DATQU1.256e-3165.26Ferredoxin OS=Datura quercifolia PE=1 SV=1[more]
FER_GUITH1.641e-3167.02Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER1_ANAVT1.641e-3165.98Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER_SPIPL2.143e-3166.32Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]
FER_SOLLY2.799e-3166.32Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER4_ARATH2.799e-3164.13Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]
FER1_HYONI2.799e-3165.26Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617310 ID=DN617310; Name=DN617310; organism=Citrus sinensis; type=EST; length=563bp
TTTTTTCTCTCTACCATATGTTGCATATCATAAACATGAAAGACTTAACA
CCAAATGGTAATGAAAAAGTTCATCGTCACAAGTGAAATGGAAAGCATTT
GTTCAGACCGACTCACAATGATCTACTGCTTTAGCACAAATAGAAAGCAC
AAAGCAGAAAGCAAAAGCCAAGATCATAACATTATTTAGTTAAGTTCAGA
TTCCTTGTGTGTATAAATCACACAATCTGATTTTGGATATGCAATGCATG
TAAGGACATAACCTTTCTCCATCTGGTTATCATCAAGGAATGATCCATCT
GATTGGTCAACAGAGCCTGAAACCATCAGGCCAGCGCAAGTAGAGCAGGC
ACCAGCGCGGCATGAGTAGGGGAGCTCCATTCCGGCATCTTCAGCAGAGT
CGAGGATGTAAGCATCGTCGGGGGCATCAAACTCGTTTTCCTCTCCATCT
GGTCCAATTAGTTTCACTTTGTAAACTGCCATTGCAGATACTTTGAATGA
AGAAGACTTNCAGCCAAAAGCTTTTGAAACACTCCTGGAAACCAAGGAAC
GGGGGCTCTTGAC
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