DN617310

Overview
NameDN617310
Unique NameDN617310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.655e-31
Identity = 62/95 (65.26%), Postives = 78/95 (82.11%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ P+G + EF+ PDD YILD AE+ G+ LPYSCRAG+CS+CAG + +G V+QSDGSFLDD+Q+E+G+VLTC+AY KSD  I THKE E
Sbjct:    1 ASYKVKLVTPEGTQ-EFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.774e-31
Identity = 61/95 (64.21%), Postives = 77/95 (81.05%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKV L  P G++   + PDD YILD+AE+AG++LPYSCRAGACS+CAG + +G+VDQSD SFLDD+QM+ G+VLTC+AYP SDC I THKE +
Sbjct:    1 ATYKVTLKTPSGDQT-IECPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEED 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.774e-31
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKVKLI P+G   EF+ PDD YILD AE+ G +LPYSCRAG+CS+CAG + +GSVDQSDG+FLD++Q   G+VLTC+AYPK D  I THKE E
Sbjct:   47 MASYKVKLITPEGPI-EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEE 141          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.774e-31
Identity = 64/95 (67.37%), Postives = 75/95 (78.95%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A Y VKLI PDGE  E   PDD YILD AE+ G++LPYSCRAG+CS+CAG +VSG +DQSD SFLDD+Q+  G+VLTC AYPKSD VI THKE +
Sbjct:   44 ATYNVKLITPDGEV-ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDD 137          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.774e-31
Identity = 64/95 (67.37%), Postives = 75/95 (78.95%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A Y VKLI PDGE  E   PDD YILD AE+ G++LPYSCRAG+CS+CAG +VSG +DQSD SFLDD+Q+  G+VLTC AYPKSD VI THKE +
Sbjct:   44 ATYNVKLITPDGEV-ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDD 137          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.235e-31
Identity = 65/93 (69.89%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  201 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 479
            A YKVKLI PDG   EF+ PDD YILD AE+ G +LPYSCRAGACS+CAG +V GSVDQSD SFLDD+Q+  G+VLTC+AYPKS+  I THKE
Sbjct:    1 ASYKVKLITPDGPI-EFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKE 92          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.235e-31
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ P G++ EF  PDD YILD AE+ G++LPYSCRAG+CS+CAG +  G VDQSDGSFLDD Q+ +G+VLTC+AYP SD  I THKE E
Sbjct:    1 ATYKVKLVTPSGQQ-EFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_PHYAF (Ferredoxin OS=Physalis alkekengi var. francheti PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.144e-31
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKLI PDG    FD PD+ YILD+AE+ G +LPYSCRAG+CS+CAG + +G+VDQSDG+FLDD+Q+  G+VLTC+AYP+SD  I THKE E
Sbjct:    1 ATYKVKLITPDGPV-VFDCPDNEYILDAAEEQGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQVADGFVLTCVAYPQSDVTIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 8.144e-31
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = -1
Query:  201 MAVYKVKLIGPD-GEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 482
            MAVYKV+LI  + G +   + PDD YILD+AE+ G++LPYSCRAGACSTCAG +V G+VDQSD SFLDD Q+  GYVLTC+AYP SDC + TH+E
Sbjct:    1 MAVYKVRLICEEQGLDTTIECPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQE 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.064e-30
Identity = 62/93 (66.67%), Postives = 76/93 (81.72%), Query Frame = -1
Query:  195 YKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 473
            YKVKL+ P+GE+ EF+ PDD YILD+AE+ G++LPYSCRAG+CS+CAG +VSG VD SD SFL+D+ M+ GYVLTC AY  SD VI THKE E
Sbjct:    4 YKVKLLTPEGEK-EFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEE 95          
The following BLAST results are available for this feature:
BLAST of DN617310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_MEDSA3.655e-3165.26Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FER_SCEQU4.774e-3164.21Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER1_SOLLC4.774e-3165.63Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER1_ORYSJ4.774e-3167.37Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI4.774e-3167.37Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER_SOLLS6.235e-3169.89Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER_COLES6.235e-3165.26Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]
FER_PHYAF8.144e-3165.26Ferredoxin OS=Physalis alkekengi var. francheti PE... [more]
FER1_CYAPA8.144e-3165.26Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER_PANGI1.064e-3066.67Ferredoxin OS=Panax ginseng PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01A15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617310 ID=DN617310; Name=DN617310; organism=Citrus sinensis; type=EST; length=563bp
TTTTTTCTCTCTACCATATGTTGCATATCATAAACATGAAAGACTTAACA
CCAAATGGTAATGAAAAAGTTCATCGTCACAAGTGAAATGGAAAGCATTT
GTTCAGACCGACTCACAATGATCTACTGCTTTAGCACAAATAGAAAGCAC
AAAGCAGAAAGCAAAAGCCAAGATCATAACATTATTTAGTTAAGTTCAGA
TTCCTTGTGTGTATAAATCACACAATCTGATTTTGGATATGCAATGCATG
TAAGGACATAACCTTTCTCCATCTGGTTATCATCAAGGAATGATCCATCT
GATTGGTCAACAGAGCCTGAAACCATCAGGCCAGCGCAAGTAGAGCAGGC
ACCAGCGCGGCATGAGTAGGGGAGCTCCATTCCGGCATCTTCAGCAGAGT
CGAGGATGTAAGCATCGTCGGGGGCATCAAACTCGTTTTCCTCTCCATCT
GGTCCAATTAGTTTCACTTTGTAAACTGCCATTGCAGATACTTTGAATGA
AGAAGACTTNCAGCCAAAAGCTTTTGAAACACTCCTGGAAACCAAGGAAC
GGGGGCTCTTGAC
back to top