DN617310

Overview
NameDN617310
Unique NameDN617310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.064e-30
Identity = 63/96 (65.62%), Postives = 77/96 (80.21%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKVK I P+GE  E +  DD Y+LD+AE+AG++LPYSCRAG+CS+CAG +VSGSVDQSD SFLDD Q+ +G+VLTC AYP SD  I THKE +
Sbjct:   52 MATYKVKFITPEGEL-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEED 146          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.389e-30
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVK I P+GE+ E +  DD Y+LD+AE+AG++LPYSCRAG+CS+CAG +VSG VDQSD SFLDD+Q+ +G+VLTC AYP SD  I THKE E
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.389e-30
Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A Y VKLI P+GE  E   PDD YILD AE+ G++LPYSCRAG+CS+CAG +VSGS+DQSD SFLDD+Q+  G+VLTC+AYP SD VI THKE +
Sbjct:   39 ATYNVKLITPEGEV-ELQVPDDVYILDYAEEEGIDLPYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSDVVIETHKEDD 132          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.389e-30
Identity = 61/95 (64.21%), Postives = 78/95 (82.11%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVK I P+GE+ E +  DD Y+LD+AE+AG++LPYSCRAG+CS+CAG +VSGSVDQSD SFLDD+Q+ +G+VLTC AYP SD  I TH+E +
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREED 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.814e-30
Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV LI  +     FD PDD Y+LD AE+ G++LPYSCRAG+CS+CAG +V+GSVDQSD SFLDD+Q+E G+VLTC AYP +D  I THKE E
Sbjct:   48 MATYKVTLITKESGTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEE 143          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.814e-30
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKV LI P+G++ EF+ PDD YILD A +   +LPYSCRAG+CS+CAG + +GSVDQSDGS+LDD+QME G+VLTC+AYP SD  I THKE E
Sbjct:    1 ATYKVTLITPEGKQ-EFEVPDDVYILDHAAEEVGDLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.369e-30
Identity = 63/97 (64.95%), Postives = 74/97 (76.29%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENE-FDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV LI  +   NE  + PDD YILD AE+ G++LPYSCRAGACSTCAG +  G +DQSD SFLDD+Q+E GYVLTC+AYP SDC I TH+E E
Sbjct:    1 MASYKVTLINEEMGLNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEE 97          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.369e-30
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = -1
Query:  195 AVYKVKLIGPD-GEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YK+ L+  + G +  FD  +D YILD+AE+ G+ELPYSCRAGACSTCAG +  G+VDQSD SFLDD QM KGYVLTCIAYP+SDC I TH E E
Sbjct:    1 ADYKIHLVSKEEGIDVTFDCSEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVEQE 96          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.095e-30
Identity = 58/95 (61.05%), Postives = 75/95 (78.95%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKV L+ P G +   D PDD Y+LD+AE+AG++LPYSCRAG+CS+CAG + +G+VDQ D SFLDD+Q+E G+VLTC+AYPK D  I THKE +
Sbjct:    1 ATYKVTLVTPSGTQT-IDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEED 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.095e-30
Identity = 64/95 (67.37%), Postives = 74/95 (77.89%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A Y VKLI P+GE  E   PDD YILD AE+ G++LPYSCRAG+CS+CAG +VSGSVDQSD S+LDD Q+  G+VLTC AYP SD VI THKE E
Sbjct:   53 ATYNVKLITPEGEV-ELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEE 146          
The following BLAST results are available for this feature:
BLAST of DN617310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_ARATH1.064e-3065.63Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER_BRANA1.389e-3065.26Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER5_MAIZE1.389e-3066.32Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE... [more]
FER3_RAPSA1.389e-3064.21Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER_SILPR1.814e-3063.54Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER_ARCLA1.814e-3065.26Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER_SYNP42.369e-3064.95Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER_PORUM2.369e-3065.63Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER1_PHYES3.095e-3061.05Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_MAIZE3.095e-3067.37Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617310 ID=DN617310; Name=DN617310; organism=Citrus sinensis; type=EST; length=563bp
TTTTTTCTCTCTACCATATGTTGCATATCATAAACATGAAAGACTTAACA
CCAAATGGTAATGAAAAAGTTCATCGTCACAAGTGAAATGGAAAGCATTT
GTTCAGACCGACTCACAATGATCTACTGCTTTAGCACAAATAGAAAGCAC
AAAGCAGAAAGCAAAAGCCAAGATCATAACATTATTTAGTTAAGTTCAGA
TTCCTTGTGTGTATAAATCACACAATCTGATTTTGGATATGCAATGCATG
TAAGGACATAACCTTTCTCCATCTGGTTATCATCAAGGAATGATCCATCT
GATTGGTCAACAGAGCCTGAAACCATCAGGCCAGCGCAAGTAGAGCAGGC
ACCAGCGCGGCATGAGTAGGGGAGCTCCATTCCGGCATCTTCAGCAGAGT
CGAGGATGTAAGCATCGTCGGGGGCATCAAACTCGTTTTCCTCTCCATCT
GGTCCAATTAGTTTCACTTTGTAAACTGCCATTGCAGATACTTTGAATGA
AGAAGACTTNCAGCCAAAAGCTTTTGAAACACTCCTGGAAACCAAGGAAC
GGGGGCTCTTGAC
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