DN617310

Overview
NameDN617310
Unique NameDN617310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.004e-30
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A Y VKLI PDGE    +  +D YILD+AEDAG++LPYSCRAGACS+C G++  G+VDQSD SFLDD+QM KG+ LTC  YP S+C I THKE +
Sbjct:    1 ATYSVKLINPDGEVT-IECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDD 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 9.004e-30
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = -1
Query:  201 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 482
            MA YKV L  PDG+ N    PDD YILD AE+ G++LPYSCRAGACSTCAG +VSG     D SFLDD+Q++ GY+LTC+AYP  DCVI THKE
Sbjct:    1 MASYKVTLKTPDGD-NVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKE 93          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.176e-29
Identity = 62/95 (65.26%), Postives = 73/95 (76.84%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKV L+ P G +   +  DD YILD+AE+ GM+LPYSCRAGACS+CAG + SGSVDQSD SFL+D QME+G+VLTCIAYP  D  I THKE E
Sbjct:    1 ATYKVTLVTPSGSQ-VIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.536e-29
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = -1
Query:  201 MAVYKVKLI-GPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 482
            MA YKV  + G  G EN  +  D+ Y LD+AE AGM+LPYSCRAGACS+CAG++ +G VDQSD SFLDD+Q++ G+VLTC+AYP SDC+I TH+E
Sbjct:   48 MATYKVTFLDGETGAENVXECSDEEYXLDAAERAGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQE 142          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.536e-29
Identity = 59/95 (62.11%), Postives = 77/95 (81.05%), Query Frame = -1
Query:  201 MAVYKVKLIGP-DGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 482
            M  YKVKL    +G + E + P+D YILD+AE+ G++LPYSCRAGACSTCAG ++SG+VDQSD SFLDD Q+++G+VLTC+AYP S+C I TH+E
Sbjct:    1 MTSYKVKLTNEKEGIDVEINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQE 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.006e-29
Identity = 61/92 (66.30%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  198 YKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 473
            YKV L  P GEE   + P+D YILD+AE+AG++LPYSCRAGACS+CAG + SG VDQSD SFLDD QM KG+VLTC+AYP SD  I TH+E+
Sbjct:    1 YKVTLKTPSGEET-IECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEA 91          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.006e-29
Identity = 61/97 (62.89%), Postives = 74/97 (76.29%), Query Frame = -1
Query:  195 MAVYKVKLIGP-DGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV L+   +G     D  DD YILD+AE+ G++LPYSCRAGACSTCAG +VSG+VDQSD SFLDD+Q+  G+VLTC+AYP SD  I THKE +
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEED 97          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.006e-29
Identity = 61/97 (62.89%), Postives = 74/97 (76.29%), Query Frame = -1
Query:  195 MAVYKVKLIGP-DGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV L+   +G     D  DD YILD+AE+ G++LPYSCRAGACSTCAG +VSG+VDQSD SFLDD+Q+  G+VLTC+AYP SD  I THKE +
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEED 97          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.006e-29
Identity = 59/97 (60.82%), Postives = 75/97 (77.32%), Query Frame = -1
Query:  195 MAVYKVKLIGP-DGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            M  +KV LI   +G     + PDD YILD+AE+ G++LPYSCRAGACSTCAG + +G+VDQSD SFLDD+Q++ GYVLTC+AYP SDC I TH+E +
Sbjct:    1 MPSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEED 97          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_THAWE (Ferredoxin OS=Thalassiosira weissflogii GN=petF PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 2.620e-29
Identity = 59/97 (60.82%), Postives = 75/97 (77.32%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENE-FDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV LI  + + N   D  DD ++LD+AE+AG++LPYSCRAGACSTCAG +  G++DQS+ +FLDD+QM  G+VLTCIAYPKSDC I  H+E E
Sbjct:    1 MATYKVTLISEEHDINTTIDCNDDVFVLDAAEEAGIDLPYSCRAGACSTCAGKVTEGTIDQSEQTFLDDDQMGAGFVLTCIAYPKSDCTILVHQEDE 97          
The following BLAST results are available for this feature:
BLAST of DN617310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_EUGVI9.004e-3063.16Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_APHSA9.004e-3064.89Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_SPIOL1.176e-2965.26Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]
FER_PHYPA1.536e-2962.11Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]
FER1_CYACA1.536e-2962.11Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_CHLFU2.006e-2966.30Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FER1_SYNP62.006e-2962.89Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE72.006e-2962.89Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER1_PLEBO2.006e-2960.82Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER_THAWE2.620e-2960.82Ferredoxin OS=Thalassiosira weissflogii GN=petF PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617310 ID=DN617310; Name=DN617310; organism=Citrus sinensis; type=EST; length=563bp
TTTTTTCTCTCTACCATATGTTGCATATCATAAACATGAAAGACTTAACA
CCAAATGGTAATGAAAAAGTTCATCGTCACAAGTGAAATGGAAAGCATTT
GTTCAGACCGACTCACAATGATCTACTGCTTTAGCACAAATAGAAAGCAC
AAAGCAGAAAGCAAAAGCCAAGATCATAACATTATTTAGTTAAGTTCAGA
TTCCTTGTGTGTATAAATCACACAATCTGATTTTGGATATGCAATGCATG
TAAGGACATAACCTTTCTCCATCTGGTTATCATCAAGGAATGATCCATCT
GATTGGTCAACAGAGCCTGAAACCATCAGGCCAGCGCAAGTAGAGCAGGC
ACCAGCGCGGCATGAGTAGGGGAGCTCCATTCCGGCATCTTCAGCAGAGT
CGAGGATGTAAGCATCGTCGGGGGCATCAAACTCGTTTTCCTCTCCATCT
GGTCCAATTAGTTTCACTTTGTAAACTGCCATTGCAGATACTTTGAATGA
AGAAGACTTNCAGCCAAAAGCTTTTGAAACACTCCTGGAAACCAAGGAAC
GGGGGCTCTTGAC
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