DN617310

Overview
NameDN617310
Unique NameDN617310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.620e-29
Identity = 56/95 (58.95%), Postives = 74/95 (77.89%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKV L+ P G +   D PDD Y+LD+AE+AG++LPYSCRAG+CS+C G + +G+VDQ D SFLDD+Q+E G+VLTC+A+PK D  I THKE +
Sbjct:    1 ATYKVTLVTPSGTQT-IDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEED 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.836e-29
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV L+ P G   EF  PDD YILD+AE+ G++LPYSCRAG+CS+CAG + +GS++Q D SFLDD+Q+++G+VLTC AYP SD  I THKE E
Sbjct:   50 MAAYKVTLVTPTGNV-EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEE 144          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.300e-28
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = -1
Query:  201 YKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 473
            YKV L  P G++   + P D YILD+AE+AG++LPYSCRAGACS+CAG + +G+VDQSD SFLDD QM  G+VLTC+AYP SDC I TH+E
Sbjct:   33 YKVTLKTPSGDKT-IECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQE 122          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.300e-28
Identity = 56/93 (60.22%), Postives = 74/93 (79.57%), Query Frame = -1
Query:  201 VYKVKLIGP-DGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 476
            +YK++L+   +G +   + P D YILD+AE+ G++LPYSCRAGACSTCAG +V GSVDQSD SFLD+ Q+  G++LTC+AYP SDCVI TH+E
Sbjct:    1 MYKIQLVNQKEGVDVTINCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQE 93          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.698e-28
Identity = 60/97 (61.86%), Postives = 74/97 (76.29%), Query Frame = -1
Query:  195 MAVYKVKLI-GPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YK+ L+   +G +  F+  +D YILD+AE+ G+ELPYSCRAGACSTCAG +  G+VDQ+D SFLDD+Q+  GYVLTCIAYP SDC I TH E E
Sbjct:    1 MADYKIHLLCEEEGIDVTFNCAEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPSSDCTISTHVEQE 97          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_BRYMA (Ferredoxin OS=Bryopsis maxima PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.218e-28
Identity = 56/95 (58.95%), Postives = 74/95 (77.89%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKV L   DG E   D  +D++ILD AE+ G+++P+SCR+G+CSTCAG +  G+VDQS+ +FLDD+QME+GYVLTC+AYP SDC I TH+E E
Sbjct:    1 ASYKVTLKLDDGSEAVIDCDEDSFILDVAEEEGIDIPFSCRSGSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVAYPTSDCTILTHQEEE 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.896e-28
Identity = 55/95 (57.89%), Postives = 73/95 (76.84%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A++KVK + PDGE    + PDD +ILD+ E+AG++LPYSCRAGACS+C G ++ G VDQS+ SFLDD+QM +G+VLTC+AYP  D  I TH E +
Sbjct:    1 AIFKVKFLTPDGERT-IEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEK 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.896e-28
Identity = 57/95 (60.00%), Postives = 71/95 (74.74%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKV  + P G +     P D Y+LD+AED G++LPYSCRAGACS+CAG + +GSV+Q DGSFLD+ QME G+VLTC+AYP SD  I THKE +
Sbjct:    2 ASYKVTFVTPSGTKT-ITCPADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEED 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.941e-28
Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = -1
Query:  201 AVYKVKLIGPD-GEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 479
            A YK+ L+  D G +   + PDD YILD+AE+ G++LPYSCRAGACSTCAG ++ G VDQSD SFLDD+Q++ G+VLTC+AYP S+  I TH+E
Sbjct:    1 ASYKIHLVNKDQGIDETIECPDDQYILDAAEEQGLDLPYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.941e-28
Identity = 61/93 (65.59%), Postives = 72/93 (77.42%), Query Frame = -1
Query:  195 YKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 473
            YK  L  P GE    D P+   ILD+AE+AG +LP+SCRAGACS+C G +VSGSVDQS+GSFLDD QME+G+VLTCIA P+SD VI THKE E
Sbjct:    2 YKTVLKTPSGEFT-LDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEE 93          
The following BLAST results are available for this feature:
BLAST of DN617310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_PHYAM2.620e-2958.95Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER1_SPIOL5.836e-2961.46Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER_CHLRE1.300e-2863.74Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER2_CYACA1.300e-2860.22Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER_PORYE1.698e-2861.86Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]
FER_BRYMA2.218e-2858.95Ferredoxin OS=Bryopsis maxima PE=1 SV=1[more]
FER_GLEJA2.896e-2857.89Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER2_PHYES2.896e-2860.00Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER3_CYACA4.941e-2859.57Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER1_EQUTE4.941e-2865.59Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617310 ID=DN617310; Name=DN617310; organism=Citrus sinensis; type=EST; length=563bp
TTTTTTCTCTCTACCATATGTTGCATATCATAAACATGAAAGACTTAACA
CCAAATGGTAATGAAAAAGTTCATCGTCACAAGTGAAATGGAAAGCATTT
GTTCAGACCGACTCACAATGATCTACTGCTTTAGCACAAATAGAAAGCAC
AAAGCAGAAAGCAAAAGCCAAGATCATAACATTATTTAGTTAAGTTCAGA
TTCCTTGTGTGTATAAATCACACAATCTGATTTTGGATATGCAATGCATG
TAAGGACATAACCTTTCTCCATCTGGTTATCATCAAGGAATGATCCATCT
GATTGGTCAACAGAGCCTGAAACCATCAGGCCAGCGCAAGTAGAGCAGGC
ACCAGCGCGGCATGAGTAGGGGAGCTCCATTCCGGCATCTTCAGCAGAGT
CGAGGATGTAAGCATCGTCGGGGGCATCAAACTCGTTTTCCTCTCCATCT
GGTCCAATTAGTTTCACTTTGTAAACTGCCATTGCAGATACTTTGAATGA
AGAAGACTTNCAGCCAAAAGCTTTTGAAACACTCCTGGAAACCAAGGAAC
GGGGGCTCTTGAC
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