DN617310

Overview
NameDN617310
Unique NameDN617310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.453e-28
Identity = 59/91 (64.84%), Postives = 72/91 (79.12%), Query Frame = -1
Query:  201 YKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 473
            +KV L  P G+ +  D  DD YILD+AE+AG+ LPYSCRAGACS+CAG + +G VDQSD SFLDD+QM++GYVLTCIAYP SD  I TH+E
Sbjct:    2 FKVTLNTPTGQ-SVIDVEDDEYILDAAEEAGLSLPYSCRAGACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTIDTHQE 91          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 8.427e-28
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAP----DDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV L+    EE++ DA     DD ++LD+AE+ G+ELPYSCRAGACSTCAG +  G +DQS+ +FLDD+Q+  G+VLTCIAYPKSDC +  H+E E
Sbjct:    1 MATYKVTLLS---EEHDIDATIDCNDDVFLLDAAEEQGIELPYSCRAGACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDE 97          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.101e-27
Identity = 60/93 (64.52%), Postives = 72/93 (77.42%), Query Frame = -1
Query:  195 YKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 473
            YK  L  P GE    D P+   ILD+AE+AG +LP+SCRAGACS+C G +VSGSVD+S+GSFLDD QME+G+VLTCIA P+SD VI THKE E
Sbjct:    2 YKTVLKTPSGEFT-LDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEE 93          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.437e-27
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKV  + P G  N    P D Y+LD+AE++G++LPYSCRAGACS+CAG + +G+V+Q DGSFL++ QME G+VLTC+AYP SD  I THKE +
Sbjct:    2 ASYKVTFVTPSGT-NTITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEED 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.202e-27
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = -1
Query:  201 YKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 473
            Y V L  P GE+    +PD +YILD+AE+AG++LPYSCRAG+CS+CAG + SG+VDQSD SFLDD+QM+ G+VLTC+AY  SDC I TH+E
Sbjct:    2 YMVTLKTPSGEQKVEVSPD-SYILDAAEEAGVDLPYSCRAGSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQE 91          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.182e-27
Identity = 56/93 (60.22%), Postives = 73/93 (78.49%), Query Frame = -1
Query:  195 YKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 473
            +KV L  PDG+++ F+ P D+YILD AE+ G+ELPYSCRAG+CS+CAG +++GS+DQSD +FLDD+Q   GY LTC+ YP SD  I TH ESE
Sbjct:    1 FKVTLDTPDGKKS-FECPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESE 92          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.462e-27
Identity = 55/91 (60.44%), Postives = 72/91 (79.12%), Query Frame = -1
Query:  201 YKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 473
            YKV L  P G++   +   DAYILD+AE+AG++LPYSCRAGACS+CAG + +G++DQSD SFLDD+Q  +G+VLTC+AY  SDC I TH+E
Sbjct:    2 YKVTLKTPSGDQT-IEVSPDAYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQE 91          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.317e-27
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = -1
Query:  195 YKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 473
            Y V L  P G E E +  +  Y+LDSAED G++LPYSCRAGACSTCAG++  G+VDQSD SFLDD+Q+   +VLTC+AYP SDC I TH+E +
Sbjct:    4 YTVTLSTPGGVE-EIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEK 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.317e-27
Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = -1
Query:  195 YKVKLIGPDGEENE-FDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 473
            Y V L+  +   N     PDD +ILD+AE+ G+ELPYSCRAGACSTCAG ++SG++DQS+ SFLDD+QM  G++LTC+AYP SDC + TH E +
Sbjct:    3 YSVTLVNEEKNINAVIKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDD 96          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.217e-26
Identity = 53/95 (55.79%), Postives = 74/95 (77.89%), Query Frame = -1
Query:  201 MAVYKVKLIGP-DGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 482
            MA YKV+L    +G +   + PDD YILD+AE+AG++LP+SCR+G+CS+C G++  G+VDQSD +FLDD+Q+  G VLTC+AYP S+C I TH+E
Sbjct:    1 MATYKVRLFNAAEGLDETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHRE 95          
The following BLAST results are available for this feature:
BLAST of DN617310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_MARPO6.453e-2864.84Ferredoxin OS=Marchantia polymorpha PE=1 SV=1[more]
FER_ODOSI8.427e-2858.00Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER1_EQUAR1.101e-2764.52Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER2_PHYAM1.437e-2757.89Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FER1_DUNSA3.202e-2762.64Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]
FER_PERBI4.182e-2760.22Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]
FER2_DUNSA5.462e-2760.44Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]
FER_RHOPL9.317e-2760.22Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER_BUMFI9.317e-2757.45Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER2_NOSMU1.217e-2655.79Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617310 ID=DN617310; Name=DN617310; organism=Citrus sinensis; type=EST; length=563bp
TTTTTTCTCTCTACCATATGTTGCATATCATAAACATGAAAGACTTAACA
CCAAATGGTAATGAAAAAGTTCATCGTCACAAGTGAAATGGAAAGCATTT
GTTCAGACCGACTCACAATGATCTACTGCTTTAGCACAAATAGAAAGCAC
AAAGCAGAAAGCAAAAGCCAAGATCATAACATTATTTAGTTAAGTTCAGA
TTCCTTGTGTGTATAAATCACACAATCTGATTTTGGATATGCAATGCATG
TAAGGACATAACCTTTCTCCATCTGGTTATCATCAAGGAATGATCCATCT
GATTGGTCAACAGAGCCTGAAACCATCAGGCCAGCGCAAGTAGAGCAGGC
ACCAGCGCGGCATGAGTAGGGGAGCTCCATTCCGGCATCTTCAGCAGAGT
CGAGGATGTAAGCATCGTCGGGGGCATCAAACTCGTTTTCCTCTCCATCT
GGTCCAATTAGTTTCACTTTGTAAACTGCCATTGCAGATACTTTGAATGA
AGAAGACTTNCAGCCAAAAGCTTTTGAAACACTCCTGGAAACCAAGGAAC
GGGGGCTCTTGAC
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