DN617307

Overview
NameDN617307
Unique NameDN617307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:103..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.006e-43
Identity = 88/102 (86.27%), Postives = 93/102 (91.18%), Query Frame = -1
Query:  277 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 582
            MAFRVPTVDVSVVDLT RLEK A+YDEIKAAIK ESE  LKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIAL+  FVK+VSWYDNEWGYS RV+DLI HM+
Sbjct:  232 MAFRVPTVDVSVVDLTARLEKAATYDEIKAAIKHESETSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMA 333          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.422e-43
Identity = 86/105 (81.90%), Postives = 94/105 (89.52%), Query Frame = -1
Query:  268 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 582
            M+FRVPTVDVSVVDLTVR+EK ASY+EIK AIKA SEG LKGI+GY E+D+VSTDF GDSRSSIFDAKAGIAL+  F+KLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  233 MSFRVPTVDVSVVDLTVRIEKGASYEEIKKAIKAASEGPLKGIMGYVEEDLVSTDFTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 4.469e-43
Identity = 86/105 (81.90%), Postives = 95/105 (90.48%), Query Frame = -1
Query:  268 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 582
            M+FRVPTVDVSVVDLTVR+EK ASY++IK AIKA SEG LKGI+GY E+D+VSTDF+GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  233 MSFRVPTVDVSVVDLTVRIEKGASYEDIKKAIKAASEGPLKGIMGYVEEDLVSTDFLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.956e-43
Identity = 86/105 (81.90%), Postives = 94/105 (89.52%), Query Frame = -1
Query:  268 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 582
            MAFRVPTVDVSVVDLTVRL K A+Y++IKAAIK ESEG LKGILGY ++D+VSTDF GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLI HM  T+
Sbjct:  201 MAFRVPTVDVSVVDLTVRLAKPATYEQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHMHSTK 305          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.453e-42
Identity = 83/103 (80.58%), Postives = 94/103 (91.26%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MAFRVP  DVSVVDLTVRLEK ASY++IKAAIK  SEG LKGILGYTED+VVSTDF+GDS SSIFDAKAGI+L+  FVKL+SWYDNE+GYSTRVVDL+VH++K
Sbjct:  229 MAFRVPNPDVSVVDLTVRLEKSASYEDIKAAIKKASEGSLKGILGYTEDEVVSTDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAK 331          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.101e-41
Identity = 84/102 (82.35%), Postives = 93/102 (91.18%), Query Frame = -1
Query:  277 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 582
            MAFRVPTVDVSVVDLTV+L K+ +YDEIKAAIKA SEGKLKGILGYTED VVSTDF+GD+ SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++
Sbjct:  228 MAFRVPTVDVSVVDLTVKLNKETTYDEIKAAIKAASEGKLKGILGYTEDAVVSTDFLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 329          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.203e-41
Identity = 82/103 (79.61%), Postives = 93/103 (90.29%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MAFRVPTVDVSVVDLTV+L+K+ +YDEIK  IK  SEGKLKG+LGYTED VVS+DF+GDSRSSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  229 MAFRVPTVDVSVVDLTVKLQKETTYDEIKKVIKQASEGKLKGVLGYTEDAVVSSDFLGDSRSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.589e-40
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MAFRVPTVDVSVVDLTV+L K+ +YDEIK  +KA +EGKLKG+LGYTED VVS+DF+GDS SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  229 MAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 2.076e-40
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MAFRVPTVDVSVVDLTV+L K+ +YDEIK  +KA +EGKLKG+LGYTED VVS+DF+GDS SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  229 MAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 4.625e-40
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MAFRVPT DVSVVDLTVRL K+ SYD+IKAA+K  SEG L+G LGYTEDDVVS+DF+GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RV+DL+ HM K
Sbjct:  227 MAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQK 329          
The following BLAST results are available for this feature:
BLAST of DN617307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3PC_PETCR2.006e-4386.27Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE3.422e-4381.90Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE4.469e-4381.90Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU9.956e-4381.90Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RHIMI6.453e-4280.58Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P_ASHGO1.101e-4182.35Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3P2_CANGA3.203e-4179.61Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P3_YEAST1.589e-4077.67Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P2_YEAST2.076e-4077.67Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P_HOMAM4.625e-4077.67Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617307 ID=DN617307; Name=DN617307; organism=Citrus sinensis; type=EST; length=582bp
AAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAA
AACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTA
AGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACA
ATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTA
GCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAG
CCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATCCAC
CACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCA
CAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGAC
CTACTGTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCC
CAAGATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGA
TTTCATCATAAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACT
GAGACATCAACAGTGGGTACACGGAAAGCCAT
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