DN617307

Overview
NameDN617307
Unique NameDN617307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:103..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.040e-40
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MAFRVPT +VSVVDLTVRL K+ SYD+IKAA+KA SEG L+G+LGYTEDDVVS DF GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RV+DLI HM K
Sbjct:  227 MAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQK 329          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.040e-40
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MA RVPT +VSVVDLTVR+EK ASYDEIK A+K  SEG L GILGYTEDD+VSTD  GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V+++K
Sbjct:  230 MAMRVPTANVSVVDLTVRIEKGASYDEIKQAVKEASEGSLNGILGYTEDDIVSTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.757e-39
Identity = 78/103 (75.73%), Postives = 91/103 (88.35%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MA RVPT +VSVVDLTVR+EK ASYDEIK A+K  SEG L GILGYTEDD+V+TD  GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V+++K
Sbjct:  230 MAMRVPTANVSVVDLTVRIEKGASYDEIKQAVKEASEGPLSGILGYTEDDIVTTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.998e-39
Identity = 77/103 (74.76%), Postives = 92/103 (89.32%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            +AFRVPTVDVSVVDLTV L+K+ +Y+EIK+ IKA SEGKLKG+LGYTED VVS+DF+GD RSSIFDA AGI L+  FVKL+SWYDNE+GYSTRVVDL+ H++K
Sbjct:  230 LAFRVPTVDVSVVDLTVNLKKETTYEEIKSVIKAASEGKLKGVLGYTEDAVVSSDFLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.915e-39
Identity = 79/104 (75.96%), Postives = 91/104 (87.50%), Query Frame = -1
Query:  271 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 582
            MAFRVPTVDVSVVDLTV L K+ SYDEIKAA+K  SEG +KGILGYTEDDVVS+DF+GD+ SSI DA AGI L+  FVKLVSWYDNE+GYSTRVVDL+ H++K+
Sbjct:  229 MAFRVPTVDVSVVDLTVNLAKETSYDEIKAALKKASEGSMKGILGYTEDDVVSSDFLGDAHSSIVDAAAGIQLTPTFVKLVSWYDNEFGYSTRVVDLVEHVAKS 332          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.678e-39
Identity = 79/105 (75.24%), Postives = 90/105 (85.71%), Query Frame = -1
Query:  268 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 582
            M+FRVPT DVSVVDLT RL   ASYDEIKAAIK+ SE ++KGILGYTE  VVS+DF+GDS SSIFDA+AGIAL+  FVKLVSWYDNEWGYS+RV+DLI HM K +
Sbjct:  228 MSFRVPTADVSVVDLTARLVNPASYDEIKAAIKSASENEMKGILGYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKNE 332          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 8.722e-39
Identity = 76/103 (73.79%), Postives = 93/103 (90.29%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MAFRVPTVDVSVVDLTV+LEK+A+YD+IK A+KA +EG +KG+LGYTED VVS+DF+GD+ +SIFDA AGI LS KFVKL+SWYDNE+GYS RVVDLI +++K
Sbjct:  229 MAFRVPTVDVSVVDLTVKLEKEATYDQIKKAVKAAAEGPMKGVLGYTEDAVVSSDFLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYSARVVDLIEYVAK 331          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.488e-38
Identity = 76/103 (73.79%), Postives = 92/103 (89.32%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            M+ RVPT +VSVVDLTVRLEK A+YDEIK A+KA ++G L GILGYTED++VSTD  GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V+++K
Sbjct:  230 MSMRVPTSNVSVVDLTVRLEKGATYDEIKEAVKAAADGPLNGILGYTEDEIVSTDLNGDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.488e-38
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MAFRVPT DVSVVDLTVRLEK A+Y+EIKA IK  SE +LKGILGYT D VVSTDFVGD++SSIFDA AGIAL+ KFVKLVSWYDNE+GYS RV+DL+ + +K
Sbjct:  230 MAFRVPTPDVSVVDLTVRLEKGATYEEIKAVIKKASENELKGILGYTNDQVVSTDFVGDAQSSIFDAAAGIALNDKFVKLVSWYDNEFGYSNRVIDLLAYAAK 332          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.943e-38
Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = -1
Query:  277 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGK-LKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 582
            MAFRVPT DVSVVDLTVRLEK ASYDEIKA IK  SE + LKGILGYTED VVSTDFVGD+ SSIFDAKAGI LS  FVKL+SWYDNE+GYSTRVVDL+ +++
Sbjct:  231 MAFRVPTPDVSVVDLTVRLEKPASYDEIKATIKKASESEELKGILGYTEDQVVSTDFVGDAHSSIFDAKAGIQLSPTFVKLISWYDNEFGYSTRVVDLLAYVA 333          
The following BLAST results are available for this feature:
BLAST of DN617307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_PANVR6.040e-4078.64Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P_COCHE6.040e-4076.70Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_CURLU1.757e-3975.73Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_PICPA2.998e-3974.76Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_ZYGRO3.915e-3975.96Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_PHYIN6.678e-3975.24Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P1_YEAST8.722e-3973.79Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P_PHANO1.488e-3873.79Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P2_RHIRA1.488e-3876.70Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P3_RHIRA1.943e-3879.61Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617307 ID=DN617307; Name=DN617307; organism=Citrus sinensis; type=EST; length=582bp
AAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAA
AACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTA
AGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACA
ATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTA
GCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAG
CCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATCCAC
CACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCA
CAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGAC
CTACTGTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCC
CAAGATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGA
TTTCATCATAAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACT
GAGACATCAACAGTGGGTACACGGAAAGCCAT
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