DN617307

Overview
NameDN617307
Unique NameDN617307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:103..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P1_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.644e-11
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = -1 
Query:  274 AFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALS---KKFVKLVSWYDNEWGYSTRVVDLIVHMSK 579
            A RVP    S+ +LTV LEK D + +++  A+K  S        GYTED++VS+D VG +  S+FDA     +S   ++ VK+ +WYDNE  Y+ ++V  + ++++
Sbjct:  232 AQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESF----GYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333
[Close]
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P1_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain COL) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.644e-11
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = -1 
Query:  274 AFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALS---KKFVKLVSWYDNEWGYSTRVVDLIVHMSK 579
            A RVP    S+ +LTV LEK D + +++  A+K  S        GYTED++VS+D VG +  S+FDA     +S   ++ VK+ +WYDNE  Y+ ++V  + ++++
Sbjct:  232 AQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESF----GYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333
The following BLAST results are available for this feature:
BLAST of DN617307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P1_STAAM2.644e-1136.79Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAC2.644e-1136.79Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617307 ID=DN617307; Name=DN617307; organism=Citrus sinensis; type=EST; length=582bp
AAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAA
AACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTA
AGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACA
ATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTA
GCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAG
CCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATCCAC
CACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCA
CAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGAC
CTACTGTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCC
CAAGATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGA
TTTCATCATAAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACT
GAGACATCAACAGTGGGTACACGGAAAGCCAT
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