DN617307

Overview
NameDN617307
Unique NameDN617307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:103..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 7.383e-38
Identity = 76/103 (73.79%), Postives = 92/103 (89.32%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MAFRVPT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  229 MAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 7.383e-38
Identity = 76/103 (73.79%), Postives = 92/103 (89.32%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MAFRVPT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  229 MAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 7.383e-38
Identity = 76/103 (73.79%), Postives = 92/103 (89.32%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MAFRVPT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  229 MAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.643e-38
Identity = 79/103 (76.70%), Postives = 88/103 (85.44%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MAFRVPT DVSVVDLT RL K ASY+EIKAA+KA + G LKGIL YTED+VVS+DFVG + SSIFDAKAGI+L+  FVKLVSWYDNE+GYS RVVDLI HM K
Sbjct:  232 MAFRVPTPDVSVVDLTCRLGKGASYEEIKAAVKAAASGPLKGILEYTEDEVVSSDFVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHK 334          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.643e-38
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = -1
Query:  283 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVH 582
            MAFRVPT DVSVVDLTV+L K  +Y++IKAAIKA SEG +KG+LGYTED VVSTDF GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ +
Sbjct:  231 MAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAY 330          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.259e-37
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            +AFRVPT+DVSVVDL VRLEK+ASYDEI A +K  SEG LKGILG+T++ VVSTDF G + SSIFD+KAGIA+SK FVKL++WYDNEWGYS RV DL+V+ +K
Sbjct:  230 LAFRVPTLDVSVVDLVVRLEKEASYDEIVATVKEASEGPLKGILGFTDESVVSTDFTGANESSIFDSKAGIAISKSFVKLIAWYDNEWGYSRRVCDLLVYAAK 332          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.259e-37
Identity = 75/103 (72.82%), Postives = 89/103 (86.41%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            M+FR+PT DVSVVDL VRLEK ASYD+IK  IK  SEG+LKGILGYTED+VVSTDF+G + SS+FDAKAGI L+ KFVKL+SWYDNE+GYS RV DLI +++K
Sbjct:  230 MSFRIPTSDVSVVDLVVRLEKGASYDQIKEVIKKASEGELKGILGYTEDEVVSTDFLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYSRRVCDLIAYVAK 332          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.259e-37
Identity = 74/103 (71.84%), Postives = 87/103 (84.47%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            M+ RVPT +VSVVDLT R+EK ASYDEIK AIK  +EG LKG+L YTEDDVVSTD +G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H++K
Sbjct:  231 MSMRVPTTNVSVVDLTARIEKGASYDEIKQAIKEAAEGPLKGVLAYTEDDVVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.259e-37
Identity = 78/103 (75.73%), Postives = 86/103 (83.50%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MA RVPT +VSVVDLT RLEK  SYDEIK A+K  SE +LKGILGYTEDD+VS+D  GD  SSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI ++SK
Sbjct:  230 MAMRVPTSNVSVVDLTCRLEKATSYDEIKKALKDASENELKGILGYTEDDIVSSDLNGDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDLIAYISK 332          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.259e-37
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = -1
Query:  283 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVH 582
            MAFRVPT DVSVVDLTV+L K  +Y++IKAAIKA SEG +KG+LGYTED VVSTDF GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ +
Sbjct:  231 MAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAY 330          
The following BLAST results are available for this feature:
BLAST of DN617307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P1_ECOLI7.383e-3873.79Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL67.383e-3873.79Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO577.383e-3873.79Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_SCHMA9.643e-3876.70Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P2_SCHPO9.643e-3876.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P_SCHCO1.259e-3771.84Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_CRYCU1.259e-3772.82Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_COLGL1.259e-3771.84Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_ASPNG1.259e-3775.73Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P1_SCHPO1.259e-3776.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617307 ID=DN617307; Name=DN617307; organism=Citrus sinensis; type=EST; length=582bp
AAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAA
AACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTA
AGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACA
ATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTA
GCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAG
CCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATCCAC
CACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCA
CAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGAC
CTACTGTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCC
CAAGATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGA
TTTCATCATAAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACT
GAGACATCAACAGTGGGTACACGGAAAGCCAT
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