DN617307

Overview
NameDN617307
Unique NameDN617307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:103..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.259e-37
Identity = 76/102 (74.51%), Postives = 90/102 (88.24%), Query Frame = -1
Query:  277 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 582
            MAFRVPT DVSVVDLTV+L K A+YDEIKAA+K  SEGKLK ++GYTED VVS+DF+GD+ S+IFDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+ H++
Sbjct:  228 MAFRVPTTDVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.645e-37
Identity = 77/105 (73.33%), Postives = 88/105 (83.81%), Query Frame = -1
Query:  268 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 582
            MAFRVPT +VSVVDLT RL+K A YD+IKAAIK  SEG +KGILGYT+D VVSTDF GD+ SSIFDA AGIAL++ FVKLVSWYDNE GYS RVVDL+ HM+  +
Sbjct:  229 MAFRVPTPNVSVVDLTCRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.148e-37
Identity = 76/103 (73.79%), Postives = 87/103 (84.47%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MAFRVPT +VSVVDLT RLEK ASYDEIKA +K  SE +LKGILGYTED VVS DF+G+S SSIFDA AGI+L+  FVKLVSWYDNEWGYS R +DL+V M++
Sbjct:  231 MAFRVPTTNVSVVDLTARLEKGASYDEIKAEVKRASENELKGILGYTEDAVVSQDFIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLDLLVFMAQ 333          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 3.664e-37
Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            M+ RVPT +VSVVDLT RLEK A+YDEIK A+K  SEG LKG+LGYTEDDVVS+D  GD  SSIFDAKAGIAL+  FVKLVSWYDNEWGYS RV+DLI ++++
Sbjct:  231 MSMRVPTSNVSVVDLTARLEKAATYDEIKQAVKEASEGPLKGVLGYTEDDVVSSDLNGDPHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVIDLIAYIAQ 333          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.664e-37
Identity = 77/103 (74.76%), Postives = 88/103 (85.44%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            M+ RVPTVDVSVVDLTVRL+K A+Y+EI  AIKA S G+LKGILGYTED VVSTDF+G   SSIFD KAGI LS  FVKL+SWYDNE+GYSTRVVDL+ H++K
Sbjct:  230 MSLRVPTVDVSVVDLTVRLKKSATYEEISEAIKAASNGELKGILGYTEDAVVSTDFLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVAK 332          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.664e-37
Identity = 73/103 (70.87%), Postives = 87/103 (84.47%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            M+ RVPT +VSVVDLTVR+EK A+YDEIK AIK  +EG LKG+L YTEDD VSTD +G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H++K
Sbjct:  230 MSMRVPTANVSVVDLTVRIEKGATYDEIKQAIKEAAEGPLKGVLAYTEDDFVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 332          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 8.163e-37
Identity = 76/103 (73.79%), Postives = 86/103 (83.50%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            M+ RVPT  VSVVDLTVR+EK ASYDEIK  IK  + G LKGIL YTEDDVVSTD  GD+ SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+ ++SK
Sbjct:  231 MSMRVPTATVSVVDLTVRIEKAASYDEIKEVIKKAANGPLKGILAYTEDDVVSTDMNGDNHSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLHYISK 333          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 8.163e-37
Identity = 74/103 (71.84%), Postives = 88/103 (85.44%), Query Frame = -1
Query:  274 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 582
            MA RVPT +VSVVDLT R EK  +YD+IKAA+KA SEG+LKGILGY+ED +VSTD  GD RSSIFDA AGIAL+ +FVKL+SWYDNEWGYS RV+DLI +++K
Sbjct:  231 MAMRVPTANVSVVDLTCRTEKPVTYDQIKAAVKAASEGELKGILGYSEDALVSTDLNGDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIAK 333          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.163e-37
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = -1
Query:  268 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 582
            MAFRVPT +VSVVDLT RLEK A YD+IK  +KA +EG LKGILGYTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  229 MAFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of DN617307 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.066e-36
Identity = 73/102 (71.57%), Postives = 92/102 (90.20%), Query Frame = -1
Query:  277 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 582
            M+ RVPTVDVSVVDLTV+L KDA+YDEIKAA+K  +EG LKG++GYTED VVS+DF+ D+RSSIFDA+AGI LS +FVKL++WYDNE+GYSTRVVDL+ +++
Sbjct:  230 MSLRVPTVDVSVVDLTVKLLKDATYDEIKAAVKEAAEGPLKGVVGYTEDQVVSSDFLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVDLLEYVA 331          
The following BLAST results are available for this feature:
BLAST of DN617307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P1_KLUMA1.259e-3774.51Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_XENLA1.645e-3773.33Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_USTMA2.148e-3773.79Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_MONAN3.664e-3772.82Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_DEBHA3.664e-3774.76Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_COLLN3.664e-3770.87Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_SCLSC8.163e-3773.79Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_PARBA8.163e-3771.84Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_COTJA8.163e-3773.33Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_PICCI1.066e-3671.57Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617307 ID=DN617307; Name=DN617307; organism=Citrus sinensis; type=EST; length=582bp
AAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAA
AACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTA
AGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACA
ATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTA
GCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAG
CCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATCCAC
CACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCA
CAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGAC
CTACTGTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCC
CAAGATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGA
TTTCATCATAAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACT
GAGACATCAACAGTGGGTACACGGAAAGCCAT
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