DN617297

Overview
NameDN617297
Unique NameDN617297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:953..1582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  356 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYP 607
            PVSVA E     F+FYK GV++  KCG    D++H V AVGYG   G  Y ++KNSWG  WG+ G+ +M+      + +CGI   ASYP
Sbjct:  267 PVSVAIEASGRDFQFYKGGVFNG-KCGT---DLDHGVAAVGYGSSKGSDYVIVKNSWGPRWGEKGFIRMKRNTGKPEGLCGINKMASYP 351          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 45/96 (46.88%), Postives = 54/96 (56.25%), Query Frame = -3
Query:  350 HAVGLV*PVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 628
            HAV    PVSV  +     F  Y  GVY    C +     NHAV AVGYG + +G  YW++KNSWG  WG+ GY KM   + N C IAT + YPVV
Sbjct:  230 HAVQNEGPVSVCIDAGQSSFGSYGGGVYYEPNCDS--WYANHAVTAVGYGTDANGGDYWIVKNSWGAWWGESGYIKMARNRDNNCAIATYSVYPVV 323          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CATL6_HUMAN (Putative cathepsin L-like protein 6 OS=Homo sapiens GN=CTSLL6 PE=5 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 47/99 (47.47%), Postives = 58/99 (58.59%), Query Frame = -3
Query:  350 AVGLV*PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSW-GENWGDHGYFKMEMGK-NMCGIATCASYPVV 625
            AV  V P+SVA       F+FYK G+Y   +C   P  ++HA++ VGY  E    D   YWL+KNS  G+NWG  GY KM   + N CGIAT ASYP V
Sbjct:  181 AVATVGPISVAAGASHVSFQFYKKGIYFEPRCD--PEGLDHAMLLVGYSYEGADSDNNKYWLVKNSSEGKNWGMDGYIKMAKDRRNNCGIATAASYPTV 277          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CATB3_GIALA (Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = -3
Query:  377 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 607
            P+  AF V   F +Y+SGVY  T      ++  HAV  VGYG +D GV YW+IKNSWG +WG+ GYF++    N CGI
Sbjct:  214 PLQTAFTVYSDFMYYESGVYQHTY---GRVEGGHAVDMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRIIRMTNECGI 288          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.073e-14
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = -3
Query:  353 PVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE--DGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 607
            PVSVA +     F+ Y SGV++  +CG    +++H VVAVGYG +   G  YW ++NSWG +WG++GY +ME         CGIA  ASYP+
Sbjct:  287 PVSVAIDAGGREFQLYDSGVFTG-RCGT---NLDHGVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTARTGKCGIAMMASYPI 374          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.073e-14
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  377 LV*PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 616
            +V P+ VA +  D    YK G+     C N  +  NHAV+ VGYGVE+G+P+W++KN+WG +WG+ GYF+++   N CGI
Sbjct:  239 IVGPIPVAIDASD-IVGYKRGIIRY--CENHGL--NHAVLLVGYGVENGIPFWILKNTWGADWGEQGYFRVQQNINACGI 313          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.073e-14
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = -3
Query:  377 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 607
            PV  AF V   F  YKSGVY         +   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  248 PVEGAFTVYSDFLQYKSGVYQHV---TGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = -3
Query:  377 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 607
            PVSVA +VVD    YKSGV    K  +    +NH V+ VGYG E+ V YW +KNSWG +WG+ G+F+++   N CGI
Sbjct:  260 PVSVAIDVVD-LTNYKSGV---AKHCSVDHGLNHGVLLVGYGQENDVKYWTLKNSWGSDWGEQGFFRIKRDVNSCGI 332          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CATM_MOUSE (Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 44/99 (44.44%), Postives = 56/99 (56.57%), Query Frame = -3
Query:  350 HAVGLV*PVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV----EDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 628
            +AV  + P+SVA +     F FYK G+Y    C +    V H+++ VGYG      DG  YWL+KNS G  WG+ GY K+   K N CGIAT A YP V
Sbjct:  237 NAVASIGPISVAIDARHASFLFYKRGIYYEPNCSSCV--VTHSMLLVGYGFTGRESDGRKYWLVKNSMGTQWGNKGYMKISRDKGNHCGIATYALYPRV 333          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.653e-14
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = -3
Query:  377 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 607
            P+ +AFEV + F  Y  GVY  T      +   HAV  +G+G++DG+PYW + NSW  +WG+ G+F++  G + CGI
Sbjct:  275 PLEIAFEVYEDFLNYDGGVYVHT---GGKLGGGHAVKLIGWGIDDGIPYWTVANSWNTDWGEDGFFRILRGVDECGI 348          
The following BLAST results are available for this feature:
BLAST of DN617297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
XCP1_ARATH3.884e-1446.07Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
CRUST_PANBO3.884e-1446.88Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]
CATL6_HUMAN3.884e-1447.47Putative cathepsin L-like protein 6 OS=Homo sapien... [more]
CATB3_GIALA3.884e-1448.72Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=... [more]
CYSP1_ORYSJ5.073e-1444.57Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CATV_NPVAP5.073e-1445.00Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATB_PIG5.073e-1446.75Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CATV_GVXN6.625e-1449.35Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
CATM_MOUSE6.625e-1444.44Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1[more]
CPR6_CAEEL8.653e-1441.56Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617297 ID=DN617297; Name=DN617297; organism=Citrus sinensis; type=EST; length=630bp
TTTTTTTTTTTTTTTTTAGGGGCAGAAGACAACCAAATTTTTTAAGCAAT
GCATTGATATTTGCCTAAAGCTTCCATATAACAACTACCTTGCATTGACA
AAATATATATAACATCGTTGGTGTCCTAGTCACAATGACTGTTTACATGG
ACATAGATCTCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTAT
TGTAGATTATATGGACATTAATCTCCGAATTTATTTCGTACATAAAGCCA
ACCATTCTGCTATCATTCTTGAGTGAAATAATATAAGTTTTATGAGCAAA
TGACTTGCTGATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCC
ACAACTGGGTATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCAT
CTCCATCTTAAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCT
TAATCAGCCAATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACG
ACGGCATGGTTCACATCCATGGGAGTATTTCCACATTTAGTGCTGCTGTA
AACTCCACTCTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACAC
TCACAGGTCAAACAAGACCAACTGCATGCT
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