DN617297

Overview
NameDN617297
Unique NameDN617297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:953..1582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 31/91 (34.07%), Postives = 55/91 (60.44%), Query Frame = -3
Query:  350 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV-----PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 607
            P+++A + V+ ++FY  GV+    C   P  ++H ++ VGY  ++ +     PYW++KNSWG +WG+ GY  +  GKN CG++   S  ++
Sbjct:  257 PLAIAADAVE-WQFYIGGVFD-IPCN--PNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII 343          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = -3
Query:  356 PVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM----GKNMCGIATCASYP 607
            P+SV  E     F+ YKSGV+    CG     ++HAV AVGYG  DG  Y +IKNSWG NWG+ GY +++      +  CG+   + YP
Sbjct:  263 PLSVLVEAGGKPFQLYKSGVFDGP-CGTK---LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP 347          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = -3
Query:  350 RFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 571
            +FY+ G+        +   ++HAV+ VGYGV E   P+W++KNSWG  WG++GYF+M  G   CGI T A+  ++
Sbjct:  244 QFYQHGISHPWWIFCSKYLLDHAVLLVGYGVSEKNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGINTVATSAMI 318          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: ANAN_ANACO (Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 33/100 (33.00%), Postives = 54/100 (54.00%), Query Frame = -3
Query:  323 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKM----EMGKNMCGIATCASYPVVA*SAPEEIV 607
            P++ A +    F+ YK GV++   CG     +NHA+V +GYG +  G  +W+++NSWG  WG+ GY ++         +CGIA    YP +      E++
Sbjct:  250 PIAAALDASGNFQHYKRGVFTGP-CGTR---LNHAIVIIGYGQDSSGKKFWIVRNSWGAGWGEGGYIRLARDVSSSFGLCGIAMDPLYPTLQSGPSVEVI 345          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = -3
Query:  353 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 607
            PVSV  E     F+ Y+ G++    CGN    V+HAV AVGYG      Y LIKNSWG  WG++GY +++ G      +CG+ T + YPV
Sbjct:  262 PVSVVLEAAGKDFQLYRGGIFVGP-CGNK---VDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 343          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = -3
Query:  353 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKME----MGKNMCGIATCASYPV 607
            PVSV  +    GF+FYK G+Y    CG    + +HAV AVGYG      Y L+KNSWG NWG+ GY +++      K  CG+ T + +P+
Sbjct:  129 PVSVVTDSRGRGFQFYKGGIYEGP-CGT---NTDHAVTAVGYGKT----YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 24/46 (52.17%), Postives = 36/46 (78.26%), Query Frame = -3
Query:  377 VNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 514
            +NHAV+ VGYGVE+ VP+W  KN+WG++WG+ GYF++    + CG+
Sbjct:  272 LNHAVLLVGYGVENNVPFWTFKNTWGKDWGEEGYFRVRQNVDACGM 317          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = -3
Query:  353 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 607
            PVSV  E     F+ YK G++  + CG     V+HAV AVGYG   G  Y LIKNSWG  WG++GY ++         +CG+   + YP+
Sbjct:  261 PVSVVVESAGRDFQNYKGGIFEGS-CGTK---VDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 346          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CATB1_GIALA (Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = -3
Query:  377 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 607
            P+     V     +Y+SGVY  T  G   +   HA+  VGYG  +DG  YW+IKNSWG +WG++GYF++  G N C I
Sbjct:  218 PLQTMIVVYADLSYYESGVYKHTY-GTINLGF-HALEIVGYGTTDDGTDYWIIKNSWGPDWGENGYFRIVRGVNECRI 293          
BLAST of DN617297 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = -3
Query:  362 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVP-------YWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 607
            P++VA       + Y SGV     C  + +D  H V+ VG+G     P       YW+IKNSWG+NWG+ GY+K+  G+N+CG+ +  S
Sbjct:  269 PLAVAINAA-WMQTYMSGVSCPYVCAKSRLD--HGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVS 354          
The following BLAST results are available for this feature:
BLAST of DN617297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
CYSP1_DICDI6.201e-1234.07Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
PAPA2_CARPA8.099e-1242.70Chymopapain OS=Carica papaya PE=1 SV=2[more]
CATL_SCHMA2.356e-1141.33Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
ANAN_ANACO2.356e-1133.00Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2[more]
PAPA1_CARPA3.078e-1143.33Papain OS=Carica papaya PE=1 SV=1[more]
MEX1_JACME3.078e-1142.22Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATV_NPVBS3.078e-1152.17Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
PAPA4_CARPA4.019e-1141.11Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
CATB1_GIALA4.019e-1143.59Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=... [more]
CYSP_PEA6.856e-1138.20Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01A09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617297 ID=DN617297; Name=DN617297; organism=Citrus sinensis; type=EST; length=630bp
TTTTTTTTTTTTTTTTTAGGGGCAGAAGACAACCAAATTTTTTAAGCAAT
GCATTGATATTTGCCTAAAGCTTCCATATAACAACTACCTTGCATTGACA
AAATATATATAACATCGTTGGTGTCCTAGTCACAATGACTGTTTACATGG
ACATAGATCTCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTAT
TGTAGATTATATGGACATTAATCTCCGAATTTATTTCGTACATAAAGCCA
ACCATTCTGCTATCATTCTTGAGTGAAATAATATAAGTTTTATGAGCAAA
TGACTTGCTGATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCC
ACAACTGGGTATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCAT
CTCCATCTTAAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCT
TAATCAGCCAATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACG
ACGGCATGGTTCACATCCATGGGAGTATTTCCACATTTAGTGCTGCTGTA
AACTCCACTCTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACAC
TCACAGGTCAAACAAGACCAACTGCATGCT
back to top