DN617290

Overview
NameDN617290
Unique NameDN617290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7350 contig Csv1_Contig7350:71..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: TDXH_THEVO (Probable peroxiredoxin OS=Thermoplasma volcanium GN=TV1123 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.489e-14
Identity = 43/132 (32.58%), Postives = 79/132 (59.85%), Query Frame = 2
Query:  242 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNEVVQ-LIY 616
            GQ  P FT+   +G  ++LS ++GK V+++ +P D TP CT +  AF + YE F+K G E+IG+S D   SH A+ +  +      +P+ +++D   +V +E+ +  +  G+   R  +++D N++V+ +IY
Sbjct:    6 GQKAPDFTVNTSKGP-ITLSNYRGKWVLLFSHPGDFTPVCTTEFIAFTERYEDFQKLGVELIGLSIDSVFSHIAWIRDIKEHFGIDIPFPIIADIDKEVAREYNLIDEKSGATV-RGVFIIDPNQIVRWMIY 135          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BAS1B_ARATH (2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.206e-13
Identity = 61/178 (34.27%), Postives = 88/178 (49.44%), Query Frame = 2
Query:  122 IPSKSSSQSQFYGLGFSFSSNLPIPSSTSFKT-SISAKVSK----GQAPPSFTLK---DQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNEVVQ 607
            IPS S+S S     GFS   +L    S S +  ++ A+       G   P F  +   DQE   V LS++ GK  V+++FYP D T  C  +  AF D YE+F+K   EV+G+S D   SH A+ +  R       L Y L+SD    + K +GV     G +  R  +++DK  V+Q
Sbjct:   37 IPSSSASSSSLCS-GFSSLGSLTTNRSASRRNFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPDQG-IALRGLFIIDKEGVIQ 212          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: TDXH2_THEAC (Probable peroxiredoxin 2 OS=Thermoplasma acidophilum GN=Ta0954 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.726e-12
Identity = 40/132 (30.30%), Postives = 78/132 (59.09%), Query Frame = 2
Query:  242 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNEVVQ-LIY 616
            GQ  P FT+   +G  V+LS ++GK V+++ +P D TP CT +  AF + Y+ F+  G E++G+S D   SH A+ +  +      +P+ +++D   +V +++ +  +  G+   R  +++D N++V+ +IY
Sbjct:    2 GQKAPDFTVNTSKGP-VTLSSYRGKWVLLFSHPGDFTPVCTTEFIAFTERYKDFQALGVELLGLSIDSVYSHIAWIRDIKEHFGIEIPFPIIADIDKEVARQYNLIDEKSGATV-RGVFIIDPNQIVRWMIY 131          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BAS1_WHEAT (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.036e-11
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  242 GQAPPSFTLK---DQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNEVVQ 607
            G   P F  +   DQE  NV LS + GK  V+++FYP D T  C  +  AF D +E+F+K   E++G+S D   SH A+ +  R       L Y L+SD    + K +GV     G +  R  +++DK  V+Q
Sbjct:   21 GNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQG-IALRGLFIIDKEGVIQ 152          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BAS1_SPIOL (2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.036e-11
Identity = 59/177 (33.33%), Postives = 84/177 (47.46%), Query Frame = 2
Query:  116 LAIPSKSSSQSQFYGLGFSFSSNLPIPSSTSFKTSISAKVSK--GQAPPSFTLK---DQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNEVVQ 607
            L+ PS S+S       GF+  S+L   S  SF     A      G   P F  +   DQE   V LS + GK  V+++FYP D T  C  +  AF D + +F+K   EV+G+S D   SH A+ +  R       L Y L+SD    + K +GV     G +  R  +++DK  V+Q
Sbjct:   36 LSSPSASASLRS----GFARRSSLSSTSRRSFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQG-IALRGLFIIDKEGVIQ 207          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BAS1_ORYSJ (2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.036e-11
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  242 GQAPPSFTLK---DQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNEVVQ 607
            G   P F  +   DQE  NV LS + GK  V+++FYP D T  C  +  AF D Y++F+K   E++G+S D   SH A+ +  R       L Y L+SD    + K +GV     G +  R  +++DK  V+Q
Sbjct:   71 GNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQG-IALRGLFIIDKEGVIQ 202          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BAS1_HORVU (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.036e-11
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  242 GQAPPSFTLK---DQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNEVVQ 607
            G   P F  +   DQE  NV LS + GK  V+++FYP D T  C  +  AF D +E+F+K   E++G+S D   SH A+ +  R       L Y L+SD    + K +GV     G +  R  +++DK  V+Q
Sbjct:   21 GNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQG-IALRGLFIIDKEGVIQ 152          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BAS1A_ARATH (2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.036e-11
Identity = 59/177 (33.33%), Postives = 84/177 (47.46%), Query Frame = 2
Query:  116 LAIPSKSSSQSQFYGLGFSFSSNLPIPSSTSFKTSISAKVSK--GQAPPSFTLK---DQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNEVVQ 607
            L+ PS S+S       GF+  S+L   S  SF     A      G   P F  +   DQE   V LS + GK  V+++FYP D T  C  +  AF D + +F+K   EV+G+S D   SH A+ +  R       L Y L+SD    + K +GV     G +  R  +++DK  V+Q
Sbjct:   36 LSSPSASASLRS----GFARRSSLSSTSRRSFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQG-IALRGLFIIDKEGVIQ 207          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: YCF42_PORPU (Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 42/132 (31.82%), Postives = 66/132 (50.00%), Query Frame = 2
Query:  242 GQAPPSFT---LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNEVVQ 607
            GQ  P F+   + DQE + + LS FK K V+++FYP D T  C  +  AF D Y  F +   E++G+S D   SH A+ +  R       L Y L+SD   ++   + V     G +  R  +++D   ++Q
Sbjct:   11 GQIAPDFSATAVYDQEFKTIKLSDFKNKYVILFFYPLDFTFVCPTEITAFSDKYSDFSELNTEILGVSVDSEYSHLAWLQTDRESGGLGDLEYPLVSDLKKEISIAYNVLNS--GGVALRGLFIIDPKGIIQ 140          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: PRDX_ASCSU (Peroxiredoxin OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 43/142 (30.28%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  227 AKVSKGQAPPSFT---LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNEVVQLIYNN 622
            +K   G+  P FT   + D + +++SLS +KGK VV++FYP D T  C  +  AF +   +FKK G EV+  S D   SH A+    R       +   ++SD  +++ +++GV  +  G +  R  +++D   +++ I  N
Sbjct:    2 SKAMIGKPAPEFTATAVVDGDFKSISLSDYKGKYVVLFFYPMDFTFVCPTEIIAFSEHVGEFKKLGVEVLAASTDSQFSHLAWINTPRKQGGLGEMKIPIISDNNHQISRDYGVLKEDDG-IAYRGLFIIDPKGILRQITVN 142          
The following BLAST results are available for this feature:
BLAST of DN617290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TDXH_THEVO6.489e-1432.58Probable peroxiredoxin OS=Thermoplasma volcanium G... [more]
BAS1B_ARATH4.206e-1334.272-Cys peroxiredoxin BAS1-like, chloroplastic OS=Ar... [more]
TDXH2_THEAC2.726e-1230.30Probable peroxiredoxin 2 OS=Thermoplasma acidophil... [more]
BAS1_WHEAT1.036e-1135.342-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_SPIOL1.036e-1133.332-Cys peroxiredoxin BAS1, chloroplastic OS=Spinaci... [more]
BAS1_ORYSJ1.036e-1135.342-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza s... [more]
BAS1_HORVU1.036e-1135.342-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1A_ARATH1.036e-1133.332-Cys peroxiredoxin BAS1, chloroplastic OS=Arabido... [more]
YCF42_PORPU3.937e-1131.82Putative peroxiredoxin ycf42 OS=Porphyra purpurea ... [more]
PRDX_ASCSU3.937e-1130.28Peroxiredoxin OS=Ascaris suum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617290 ID=DN617290; Name=DN617290; organism=Citrus sinensis; type=EST; length=624bp
TCATCAAGGAGCCTTATCTCTTCCACTCAAATGGGCTGCTTCACTGAATC
TCCCAAAGCACACTCTCCCACCTTTTCTCCCCACTCAAACTCCCAGAACC
CCACCTTCCCAAAGCCTCGCAATTCCCTCCAAATCATCATCACAGTCTCA
ATTTTATGGCCTCGGGTTCTCTTTTTCTTCCAACTTGCCAATCCCATCTT
CCACATCTTTCAAGACTTCCATTTCTGCCAAGGTGAGCAAAGGACAGGCG
CCTCCTTCCTTCACATTGAAAGATCAAGAGGGCAGGAATGTGAGCCTATC
CAAGTTTAAAGGGAAGCCCGTGGTTGTTTATTTTTACCCTGCTGATGAGA
CACCTGGCTGCACCAAACAGGCATGCGCTTTTAGGGATTCTTATGAGAAA
TTTAAGAAAGCAGGAGCTGAGGTTATTGGGATTAGTGGTGATGATTCATC
GTCACACAAGGCATTTGCAAAAAAGTATAGGCTTCCATATACATTGCTGA
GCGACGAGGGTAACAAGGTGAGGAAAGAATGGGGGGTTCCAGCAGACTTC
TTTGGATCATTGCCTGGGAGACAGACTTACGTTCTTGACAAGAATGAAGT
GGTTCAGCTCATCTACAACAACCA
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