DN617287

Overview
NameDN617287
Unique NameDN617287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4014 contig Csv1_Contig4014:187..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_RICPR (Thioredoxin reductase OS=Rickettsia prowazekii GN=trxB PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.066e-44
Identity = 94/206 (45.63%), Postives = 132/206 (64.08%), Query Frame = 3
Query:  105 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            + TKV IIGSGP             LKPIL  G     + PGGQLT T+DVEN+PGF + I G  LM++   Q+   GT+I ++ V +VD   RPFK+FT + +   AD++I+ TGA +K L       F   G+S+CA+CDG    F+++ + V+GGG+SA+EEA +LT + +KV ++HRR+SFRA KI+Q+R   NPKI VIW+
Sbjct:    3 ITTKVLIIGSGPAGLSAAIYTARSALKPILING-----MQPGGQLTMTTDVENYPGFAETIQGPWLMEQMSMQAKNVGTEIISDYVERVDLSKRPFKIFTGTGNEYEADSIIICTGAESKWLGIASEQEFRGFGVSSCAICDGF--FFKNQEIVVVGGGNSALEEALYLTNHANKVTVVHRRNSFRAEKILQDRLFKNPKISVIWD 201          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_RICTY (Thioredoxin reductase OS=Rickettsia typhi GN=trxB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.524e-44
Identity = 94/206 (45.63%), Postives = 131/206 (63.59%), Query Frame = 3
Query:  105 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            + TKV IIGSGP             LKPIL  G     + PGGQLT T+DVEN+PGF + I G  LM++   Q+   GT+I  + V +VD   RPFK+FT + +   AD++I+ TGA +K L       F   G+S+CA+CDG    F+++ + V+GGG+SA+EEA +LT + +KV ++HRR+SFRA KI+Q+R   NPKI VIW+
Sbjct:    3 ITTKVLIIGSGPAGLSAAIYTARSSLKPILING-----MQPGGQLTMTTDVENYPGFAKTIQGPWLMEQMSIQAKNVGTEIINDYVERVDLSKRPFKIFTGTGNKYEADSIIICTGAESKWLGITSEQEFRGFGVSSCAICDGF--FFKNQDIVVVGGGNSALEEALYLTNHANKVTVVHRRNSFRAEKILQDRLFKNPKISVIWD 201          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_RICCN (Thioredoxin reductase OS=Rickettsia conorii GN=trxB PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.603e-44
Identity = 97/206 (47.09%), Postives = 130/206 (63.11%), Query Frame = 3
Query:  105 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            + TKV IIGSGP             LKPIL  G     + PGGQLT T+DVEN+PGF + + G  LM++   Q+   GT+I ++ V KVD   RPFKVFT + +   A+++I+ TGA AK L       F   G+SACA CDG    F+++ + V+GGG+SA+EEA +LT + +KV I+HRRDSFRA KI+Q+R   N KI VIW+
Sbjct:    3 ITTKVLIIGSGPAGLSAAIYTARAALKPILING-----MQPGGQLTITTDVENYPGFAETVQGPWLMEQMYMQAKNVGTEIVSDYVEKVDLSKRPFKVFTGAGNEYDAESIIICTGAEAKWLGIASEQKFRGFGVSACATCDGF--FFKNQEIVVVGGGNSAVEEALYLTNHANKVTIVHRRDSFRAEKILQDRLFKNSKISVIWD 201          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_STRCL (Thioredoxin reductase OS=Streptomyces clavuligerus GN=trxB PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 5.089e-43
Identity = 96/203 (47.29%), Postives = 121/203 (59.61%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL--ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V IIGSGP             L+P++FEG     +  GG L  T+DVENFPGF  GI+G DLMD  R Q+ RFG ++  + V  VD      K  TDS   +  A  VIV TG+  +KL  P  DA   RG+S CA CDG    F+D+ + V+GGGD+AMEEA FL+++   V I+HRRDS RASK MQ+RA  +PKI   WN
Sbjct:    7 VIIIGSGPAGYTAALYTARASLQPLVFEG----AVTAGGALMNTTDVENFPGFRDGIMGPDLMDNMRAQAERFGAELIPDDVVSVDLTG-DIKTVTDSAGTVHRAKAVIVTTGSQHRKLGLPREDALSGRGVSWCATCDGF--FFKDQDIVVVGGGDTAMEEATFLSRFAKSVTIVHRRDSLRASKAMQDRAFADPKISFAWN 202          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_STRCO (Thioredoxin reductase OS=Streptomyces coelicolor GN=trxB PE=3 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 8.681e-43
Identity = 95/203 (46.80%), Postives = 123/203 (60.59%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL--ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V IIGSGP             LKP++FEG     +  GG L  T++VENFPGF  GI+G +LMD  R Q+ RFG ++  + V  VD  S   K  TD+   +  A  VIV TG+  +KL  P  DA   RG+S CA CDG    F+D+ +AVIGGGD+AMEEA FL+++   V I+HRRD+ RASK MQ RA  +PKI  +W+
Sbjct:    7 VIIIGSGPAGYTAALYTARASLKPLVFEG----AVTAGGALMNTTEVENFPGFQDGIMGPELMDNMRAQAERFGAELIPDDVVAVDL-SGEIKTVTDTAGTVHRAKAVIVTTGSQHRKLGLPNEDALSGRGVSWCATCDGF--FFKDQDIAVIGGGDTAMEEATFLSRFAKSVTIVHRRDTLRASKAMQERAFADPKISFVWD 202          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_MYCTU (Thioredoxin reductase OS=Mycobacterium tuberculosis GN=trxB PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.308e-42
Identity = 98/203 (48.28%), Postives = 122/203 (60.10%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFK--VFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V +IGSGP            +L P++FEG      + GG L TT+DVEN+PGF  GI G +LMD  R Q+LRFG  +  E V  V     P K  V  D ++  A  VI+A GA A+ LQ PG      RG+S+CA CDG    FRD+ +AVIGGGDSAMEEA FLT++   V ++HRRD FRASKIM +RA  N KI  + N
Sbjct:   17 VIVIGSGPAGYTAALYAARAQLAPLVFEG-----TSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMEDVESVSLHG-PLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGF--FFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRARNNDKIRFLTN 211          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.792e-41
Identity = 96/204 (47.06%), Postives = 123/204 (60.29%), Query Frame = 3
Query:  114 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFK--VFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            +V +IGSGP            +L P++FEG      + GG L TT++VEN+PGF  GI G +LMD  R Q+LRFG ++ TE V  V  +  P K  V  + ++  A  VI+A G   + LQ PG      RG+SACA CDG+   FR + +AVIGGGDSAMEEA FLT++   V ++HRRD FRASKIM  RA  N KI  I N
Sbjct:   13 EVIVIGSGPAGYTAALYAARAQLTPLVFEG-----TSFGGALMTTTEVENYPGFRNGITGPELMDDMREQALRFGAELRTEDVESVSLRG-PIKSVVTAEGQTYQARAVILAMGTSVRYLQIPGEQELLGRGVSACATCDGS--FFRGQDIAVIGGGDSAMEEALFLTRFARSVTLVHRRDEFRASKIMLGRARNNDKIKFITN 208          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_MYCSM (Thioredoxin reductase OS=Mycobacterium smegmatis GN=trxB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.061e-40
Identity = 93/201 (46.27%), Postives = 118/201 (58.71%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V IIGSGP            +LKP++FEG        GG L TT++VEN+PGF +GI G +LMD+ R Q+LRF   +  E V  V  +     V    ++  A  VI+A GA A+ L  PG +A    G+S CA CDG    FRD+ + V+GGGDSAMEEA FLT++   V +IHRRD FRASKIM  RA  N KI  + N
Sbjct:   10 VIIIGSGPAGYTAAIYAARAQLKPLVFEGTQF-----GGALMTTTEVENYPGFREGITGPELMDQMREQALRFRADLRMEDVDAVQLEGPVKTVVVGDETHQARAVILAMGAAARHLGVPGEEALTGMGVSTCATCDGF--FFRDQDIVVVGGGDSAMEEATFLTRFARSVTLIHRRDEFRASKIMLERARANEKITFLTN 203          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_VIBCH (Thioredoxin reductase OS=Vibrio cholerae GN=trxB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.823e-39
Identity = 82/193 (42.49%), Postives = 125/193 (64.77%), Query Frame = 3
Query:  111 TKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRAL 689
            +K+ I+GSGP             LKP+L  G     +  GGQLTTT++VEN+PG  +G+ G  LM+R +  + RF T+I  + ++ VD  SRPF++  DS+    D +I++TGA AK L     +AF  RG+SACA CDG    +R++ +AV+GGG++A+EEA +L+   S+V+++HRRDSFR+ KI+ +R +
Sbjct:    7 SKLLILGSGPAGYTAAVYAARANLKPVLVTG-----MQQGGQLTTTTEVENWPGDAEGLTGPALMERMKEHAERFDTEIVFDHINSVDLSSRPFRLTGDSQEYTCDALIISTGASAKYLGLESEEAFKGRGVSACATCDGF--FYRNQKVAVVGGGNTAVEEALYLSNIASEVHLVHRRDSFRSEKILIDRLM 192          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_ECOLI (Thioredoxin reductase OS=Escherichia coli (strain K12) GN=trxB PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.297e-38
Identity = 83/196 (42.35%), Postives = 124/196 (63.27%), Query Frame = 3
Query:  102 TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRAL 689
            T  +K+ I+GSGP             L+P+L  G     +  GGQLTTT++VEN+PG P  + G  LM+R    + +F T+I  + ++KVD ++RPF++  D+     D +I+ATGA A+ L  P  +AF  RG+SACA CDG    +R++ +AVIGGG++A+EEA +L+   S+V++IHRRD FRA KI+  R +
Sbjct:    4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLM 192          
The following BLAST results are available for this feature:
BLAST of DN617287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
TRXB_RICPR2.066e-4445.63Thioredoxin reductase OS=Rickettsia prowazekii GN=... [more]
TRXB_RICTY3.524e-4445.63Thioredoxin reductase OS=Rickettsia typhi GN=trxB ... [more]
TRXB_RICCN4.603e-4447.09Thioredoxin reductase OS=Rickettsia conorii GN=trx... [more]
TRXB_STRCL5.089e-4347.29Thioredoxin reductase OS=Streptomyces clavuligerus... [more]
TRXB_STRCO8.681e-4346.80Thioredoxin reductase OS=Streptomyces coelicolor G... [more]
TRXB_MYCTU4.308e-4248.28Thioredoxin reductase OS=Mycobacterium tuberculosi... [more]
TRXB_MYCLE2.792e-4147.06Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
TRXB_MYCSM1.061e-4046.27Thioredoxin reductase OS=Mycobacterium smegmatis G... [more]
TRXB_VIBCH5.823e-3942.49Thioredoxin reductase OS=Vibrio cholerae GN=trxB P... [more]
TRXB_ECOLI1.297e-3842.35Thioredoxin reductase OS=Escherichia coli (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617287 ID=DN617287; Name=DN617287; organism=Citrus sinensis; type=EST; length=720bp
GAACCTTTTTTGGAATTGTAACTACTTCCTCCGCCGCGGCCGCCGCTTCT
TTTTCCGCAACCACCGCTCCCAAGATCAGCAACGCCATGGACGAAATACA
AACCCTCAAGACCAAAGTCTGCATCATTGGCAGCGGCCCCGCCGCCCACA
CTGCCGCCATCTATGCCGCCCGAGCCGAGCTCAAACCCATTCTCTTCGAG
GGCTGGATGGCCAATGATATTGCGCCTGGTGGCCAACTCACCACCACCTC
CGACGTCGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGGGGGCGACT
TGATGGATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCCAGATTTTT
ACCGAGACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTTAAAGTTTT
TACAGATTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGCCACCGGCG
CCGTTGCCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCTGGAACCGT
GGCATATCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATATTTCGGGA
CAAACCCTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGAAGAAGCCA
ACTTTTTGACAAAGTACGGATCAAAAGTTTATATAATTCATAGGAGGGAT
AGTTTTAGAGCTTCGAAGATTATGCAAAACAGGGCACTTACGAACCCTAA
GATTGATGTGATTTGGAATT
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