DN617287

Overview
NameDN617287
Unique NameDN617287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4014 contig Csv1_Contig4014:187..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_ECO57 (Thioredoxin reductase OS=Escherichia coli O157:H7 GN=trxB PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.297e-38
Identity = 83/196 (42.35%), Postives = 124/196 (63.27%), Query Frame = 3
Query:  102 TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRAL 689
            T  +K+ I+GSGP             L+P+L  G     +  GGQLTTT++VEN+PG P  + G  LM+R    + +F T+I  + ++KVD ++RPF++  D+     D +I+ATGA A+ L  P  +AF  RG+SACA CDG    +R++ +AVIGGG++A+EEA +L+   S+V++IHRRD FRA KI+  R +
Sbjct:    4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLM 192          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_HAEIN (Thioredoxin reductase OS=Haemophilus influenzae GN=trxB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.408e-38
Identity = 82/190 (43.16%), Postives = 118/190 (62.11%), Query Frame = 3
Query:  114 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNR 683
            K+ I+GSGP             LKP+L  G     +  GGQLTTT ++EN+PG  +   G  LM R    + +F T+I  + +++VD  SRPFK+F D ++   D +I+ATGA A+ +  P  + +  RG+SACA CDG    +R+KP+ VIGGG++A+EEA +L    S V++IHRRDSFRA KI+ +R
Sbjct:    8 KLLILGSGPAGYTAAIYAARANLKPVLVTG-----LQQGGQLTTTDEIENWPGDFEMTTGSGLMQRMLQHAEKFETEIVFDHINRVDLSSRPFKLFGDVQNFTCDALIIATGASARYIGLPSEENYKGRGVSACATCDGF--FYRNKPVGVIGGGNTAVEEALYLANIASTVHLIHRRDSFRAEKILIDR 190          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_STAES (Thioredoxin reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 86/201 (42.79%), Postives = 112/201 (55.72%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V IIG+GP             LK ++ E  M     PGGQ+  T +VENFPGF   I G DL  +    + +FG +     +  V+ K     +   +K + A  VI++TGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  KV I+HRRD  RA  I+Q RA  N K+D IW+
Sbjct:    8 VAIIGAGPAGMTAAVYASRANLKTVMIERGM-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAEYQYGDIKSVEDKGDYKVINLGNKEITAHAVIISTGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQNILQERAFKNDKVDFIWS 200          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_STAEQ (Thioredoxin reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 86/201 (42.79%), Postives = 112/201 (55.72%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V IIG+GP             LK ++ E  M     PGGQ+  T +VENFPGF   I G DL  +    + +FG +     +  V+ K     +   +K + A  VI++TGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  KV I+HRRD  RA  I+Q RA  N K+D IW+
Sbjct:    8 VAIIGAGPAGMTAAVYASRANLKTVMIERGM-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAEYQYGDIKSVEDKGDYKVINLGNKEITAHAVIISTGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQNILQERAFKNDKVDFIWS 200          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_STAAW (Thioredoxin reductase OS=Staphylococcus aureus (strain MW2) GN=trxB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 86/201 (42.79%), Postives = 113/201 (56.22%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            + IIG+GP             LK ++ E  +     PGGQ+  T +VENFPGF   I G DL  +    + +FG       +  V+ K     +   +K + A  VI+ATGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  KV I+HRRD  RA +I+Q+RA  N KID IW+
Sbjct:    8 IAIIGAGPAGMTAAVYASRANLKTVMIERGI-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWS 200          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_STAAS (Thioredoxin reductase OS=Staphylococcus aureus (strain MSSA476) GN=trxB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 86/201 (42.79%), Postives = 113/201 (56.22%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            + IIG+GP             LK ++ E  +     PGGQ+  T +VENFPGF   I G DL  +    + +FG       +  V+ K     +   +K + A  VI+ATGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  KV I+HRRD  RA +I+Q+RA  N KID IW+
Sbjct:    8 IAIIGAGPAGMTAAVYASRANLKTVMIERGI-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWS 200          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_STAAR (Thioredoxin reductase OS=Staphylococcus aureus (strain MRSA252) GN=trxB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 86/201 (42.79%), Postives = 113/201 (56.22%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            + IIG+GP             LK ++ E  +     PGGQ+  T +VENFPGF   I G DL  +    + +FG       +  V+ K     +   +K + A  VI+ATGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  KV I+HRRD  RA +I+Q+RA  N KID IW+
Sbjct:    8 IAIIGAGPAGMTAAVYASRANLKTVMIERGI-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWS 200          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_STAAN (Thioredoxin reductase OS=Staphylococcus aureus (strain N315) GN=trxB PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 86/201 (42.79%), Postives = 113/201 (56.22%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            + IIG+GP             LK ++ E  +     PGGQ+  T +VENFPGF   I G DL  +    + +FG       +  V+ K     +   +K + A  VI+ATGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  KV I+HRRD  RA +I+Q+RA  N KID IW+
Sbjct:    8 IAIIGAGPAGMTAAVYASRANLKTVMIERGI-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWS 200          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_STAAM (Thioredoxin reductase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxB PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 86/201 (42.79%), Postives = 113/201 (56.22%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            + IIG+GP             LK ++ E  +     PGGQ+  T +VENFPGF   I G DL  +    + +FG       +  V+ K     +   +K + A  VI+ATGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  KV I+HRRD  RA +I+Q+RA  N KID IW+
Sbjct:    8 IAIIGAGPAGMTAAVYASRANLKTVMIERGI-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWS 200          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_STAAC (Thioredoxin reductase OS=Staphylococcus aureus (strain COL) GN=trxB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 86/201 (42.79%), Postives = 113/201 (56.22%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            + IIG+GP             LK ++ E  +     PGGQ+  T +VENFPGF   I G DL  +    + +FG       +  V+ K     +   +K + A  VI+ATGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  KV I+HRRD  RA +I+Q+RA  N KID IW+
Sbjct:    8 IAIIGAGPAGMTAAVYASRANLKTVMIERGI-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWS 200          
The following BLAST results are available for this feature:
BLAST of DN617287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
TRXB_ECO571.297e-3842.35Thioredoxin reductase OS=Escherichia coli O157:H7 ... [more]
TRXB_HAEIN8.408e-3843.16Thioredoxin reductase OS=Haemophilus influenzae GN... [more]
TRXB_STAES9.296e-3742.79Thioredoxin reductase OS=Staphylococcus epidermidi... [more]
TRXB_STAEQ9.296e-3742.79Thioredoxin reductase OS=Staphylococcus epidermidi... [more]
TRXB_STAAW2.071e-3642.79Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_STAAS2.071e-3642.79Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_STAAR2.071e-3642.79Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_STAAN2.071e-3642.79Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_STAAM2.071e-3642.79Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_STAAC2.071e-3642.79Thioredoxin reductase OS=Staphylococcus aureus (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01A03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617287 ID=DN617287; Name=DN617287; organism=Citrus sinensis; type=EST; length=720bp
GAACCTTTTTTGGAATTGTAACTACTTCCTCCGCCGCGGCCGCCGCTTCT
TTTTCCGCAACCACCGCTCCCAAGATCAGCAACGCCATGGACGAAATACA
AACCCTCAAGACCAAAGTCTGCATCATTGGCAGCGGCCCCGCCGCCCACA
CTGCCGCCATCTATGCCGCCCGAGCCGAGCTCAAACCCATTCTCTTCGAG
GGCTGGATGGCCAATGATATTGCGCCTGGTGGCCAACTCACCACCACCTC
CGACGTCGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGGGGGCGACT
TGATGGATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCCAGATTTTT
ACCGAGACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTTAAAGTTTT
TACAGATTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGCCACCGGCG
CCGTTGCCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCTGGAACCGT
GGCATATCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATATTTCGGGA
CAAACCCTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGAAGAAGCCA
ACTTTTTGACAAAGTACGGATCAAAAGTTTATATAATTCATAGGAGGGAT
AGTTTTAGAGCTTCGAAGATTATGCAAAACAGGGCACTTACGAACCCTAA
GATTGATGTGATTTGGAATT
back to top