DN617287

Overview
NameDN617287
Unique NameDN617287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4014 contig Csv1_Contig4014:187..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_METJA (Putative thioredoxin reductase OS=Methanocaldococcus jannaschii GN=MJ1536 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 64/200 (32.00%), Postives = 100/200 (50.00%), Query Frame = 3
Query:  123 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASK-IMQNRALTNPKIDVIWN 719
            IIG+GP            +L  +  E   A     GG++     VEN+PGF + I G +L ++ +N + +F   I  + V K++ K RPFKV T +   L  T+++ATG   KKL     D F  RGIS C +CD  A  + +K + VIG    A+  A  L     KV +I  +   +A++ IM ++      +++I+N
Sbjct:    7 IIGAGPGGLTAGIYAMRGKLNALCIEKENA-----GGRIAEAGIVENYPGFEE-IRGYELAEKFKNHAEKFKLPIIYDEVIKIETKERPFKVITKNSEYLTKTIVIATGTKPKKLGL-NEDKFIGRGISYCTMCD--AFFYLNKEVIVIGRDTPAIMSAINLKDIAKKVIVITDKSELKAAESIMLDKLKEANNVEIIYN 197          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_STAES (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ahpF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 61/202 (30.20%), Postives = 95/202 (47.03%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDV 710
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L +      +   T I    + K D   R   V  ++ +VL + TVI++TGA  +KL  PG D   N+G++ C  CDG  P+F +K +AVIGGG+S +E A  L      V +       +A  ++Q R  + P +D+
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAEHIAQYDIDTMTGIRATNIEKTDSAIR---VTLENDAVLESKTVIISTGASWRKLNIPGEDRLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVEAAIDLAGIVKHVTLFEYASELKADSVLQERLRSLPNVDI 398          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_STAEQ (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ahpF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 61/202 (30.20%), Postives = 95/202 (47.03%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDV 710
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L +      +   T I    + K D   R   V  ++ +VL + TVI++TGA  +KL  PG D   N+G++ C  CDG  P+F +K +AVIGGG+S +E A  L      V +       +A  ++Q R  + P +D+
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAEHIAQYDIDTMTGIRATNIEKTDSAIR---VTLENDAVLESKTVIISTGASWRKLNIPGEDRLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVEAAIDLAGIVKHVTLFEYASELKADSVLQERLRSLPNVDI 398          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_STAAW (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain MW2) GN=ahpF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 61/205 (29.76%), Postives = 96/205 (46.83%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E A  L    + V +       +A  ++Q+R  +   +D+  N
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTN 401          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_STAAS (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain MSSA476) GN=ahpF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 61/205 (29.76%), Postives = 96/205 (46.83%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E A  L    + V +       +A  ++Q+R  +   +D+  N
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTN 401          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_STAAR (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain MRSA252) GN=ahpF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 61/205 (29.76%), Postives = 96/205 (46.83%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E A  L    + V +       +A  ++Q+R  +   +D+  N
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTN 401          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_STAAN (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain N315) GN=ahpF PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 61/205 (29.76%), Postives = 96/205 (46.83%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E A  L    + V +       +A  ++Q+R  +   +D+  N
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTN 401          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_STAAM (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ahpF PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 61/205 (29.76%), Postives = 96/205 (46.83%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E A  L    + V +       +A  ++Q+R  +   +D+  N
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTN 401          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_STAAC (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain COL) GN=ahpF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 61/205 (29.76%), Postives = 96/205 (46.83%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E A  L    + V +       +A  ++Q+R  +   +D+  N
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTN 401          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_STAA8 (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain NCTC 8325) GN=ahpF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 61/205 (29.76%), Postives = 96/205 (46.83%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E A  L    + V +       +A  ++Q+R  +   +D+  N
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTN 401          
The following BLAST results are available for this feature:
BLAST of DN617287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
TRXB_METJA1.947e-1832.00Putative thioredoxin reductase OS=Methanocaldococc... [more]
AHPF_STAES7.658e-1530.20Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAEQ7.658e-1530.20Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAAW1.444e-1329.76Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAAS1.444e-1329.76Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAAR1.444e-1329.76Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAAN1.444e-1329.76Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAAM1.444e-1329.76Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAAC1.444e-1329.76Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAA81.444e-1329.76Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617287 ID=DN617287; Name=DN617287; organism=Citrus sinensis; type=EST; length=720bp
GAACCTTTTTTGGAATTGTAACTACTTCCTCCGCCGCGGCCGCCGCTTCT
TTTTCCGCAACCACCGCTCCCAAGATCAGCAACGCCATGGACGAAATACA
AACCCTCAAGACCAAAGTCTGCATCATTGGCAGCGGCCCCGCCGCCCACA
CTGCCGCCATCTATGCCGCCCGAGCCGAGCTCAAACCCATTCTCTTCGAG
GGCTGGATGGCCAATGATATTGCGCCTGGTGGCCAACTCACCACCACCTC
CGACGTCGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGGGGGCGACT
TGATGGATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCCAGATTTTT
ACCGAGACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTTAAAGTTTT
TACAGATTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGCCACCGGCG
CCGTTGCCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCTGGAACCGT
GGCATATCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATATTTCGGGA
CAAACCCTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGAAGAAGCCA
ACTTTTTGACAAAGTACGGATCAAAAGTTTATATAATTCATAGGAGGGAT
AGTTTTAGAGCTTCGAAGATTATGCAAAACAGGGCACTTACGAACCCTAA
GATTGATGTGATTTGGAATT
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