DN617286

Overview
NameDN617286
Unique NameDN617286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4014 contig Csv1_Contig4014:1028..1523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_ECO57 (Thioredoxin reductase OS=Escherichia coli O157:H7 GN=trxB PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.741e-15
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = -2
Query:  298 HEPATKFLDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL 495
            H P T   +GQL+L + GYI  + G     T TS+PGVFAAGDV D  YRQA+T+AGTGCMAAL+AE YL
Sbjct:  246 HSPNTAIFEGQLELEN-GYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYL 314          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_COXBU (Thioredoxin reductase OS=Coxiella burnetii GN=trxB PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.580e-15
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = -2
Query:  289 HEPATKFLDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 495
            H+P TK    QL++   GY+  K G     T T++PGVFAAGDV D  YRQA+TAAG GCMAAL+AE YL  +
Sbjct:  245 HDPNTKIFKEQLEMDEAGYLRAKSGLQGNATATNIPGVFAAGDVTDHVYRQAITAAGMGCMAALDAERYLDSL 317          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_MYCSM (Thioredoxin reductase OS=Mycobacterium smegmatis GN=trxB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.777e-14
Identity = 34/68 (50.00%), Postives = 52/68 (76.47%), Query Frame = -2
Query:  292 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 495
            H+P ++ + GQ++L  +GY+  +  TT+TS+ GVFAAGD+ D  YRQA+TAAG+GC A+++AE +L E
Sbjct:  242 HDPRSELVRGQVELDDEGYVKVQGRTTYTSLDGVFAAGDLVDHTYRQAITAAGSGCAASIDAERWLAE 309          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_SPIBA (Thioredoxin reductase (Fragment) OS=Spironucleus barkhanus GN=TRXB PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.031e-14
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = -2
Query:  286 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIG 495
            H P T+ L GQ+ +  +GYI+ +  T +T+VPG+FAAGD  D  YRQA+ AAG+GC AAL+AE +L   G
Sbjct:  234 HTPQTRLLKGQVKMSENGYILVENQTQYTNVPGIFAAGDCCDWIYRQAIVAAGSGCKAALDAERWLASNG 303          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_BUCBP (Thioredoxin reductase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trxB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.837e-12
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = -2
Query:  292 HEPATKFLDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 495
            H P TK    QL + +D YI+ K G     T T++PG+FAAGDV D  Y+QA+T++ +GCMAAL+AE Y+ +
Sbjct:  250 HAPNTKLFKNQLFMKND-YILVKSGIHGNVTQTNIPGIFAAGDVIDHVYKQAITSSASGCMAALDAEKYIDQ 320          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_BUCAP (Thioredoxin reductase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.319e-12
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = -2
Query:  289 PATKFLDGQLDLHSDGYIITKPGT----THTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 489
            P T     QL +  DGYI  K GT    T T++PGVFAAGDV D  YRQA+T++ +GCMAAL++E YL  +
Sbjct:  249 PNTDIFTDQLKM-KDGYIKIKKGTHGNYTQTNIPGVFAAGDVIDHVYRQAITSSASGCMAALDSERYLNSL 318          
The following BLAST results are available for this feature:
BLAST of DN617286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TRXB_ECO572.741e-1560.00Thioredoxin reductase OS=Escherichia coli O157:H7 ... [more]
TRXB_COXBU3.580e-1554.79Thioredoxin reductase OS=Coxiella burnetii GN=trxB... [more]
TRXB_MYCSM1.777e-1450.00Thioredoxin reductase OS=Mycobacterium smegmatis G... [more]
TRXB_SPIBA3.031e-1451.43Thioredoxin reductase (Fragment) OS=Spironucleus b... [more]
TRXB_BUCBP2.837e-1248.61Thioredoxin reductase OS=Buchnera aphidicola subsp... [more]
TRXB_BUCAP6.319e-1252.11Thioredoxin reductase OS=Buchnera aphidicola subsp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617286 ID=DN617286; Name=DN617286; organism=Citrus sinensis; type=EST; length=496bp
TAATATATGTCTTAAAAAATTCCATCCAACAATTACATTCTAAAATGCAG
CACTAATACCAACTTAAAACAAATTCCTTATCCAATTAGTTTTTCCAACC
AACTATTGGAAGCCAATAAATAAATCACTAAGACAGTACTGATTCATCAC
TTGAATTGGTCGAGAAAAAGCCTTCTTCATTCAGAGGTAGATTTAGATCA
AGTTTGCATGTAGACTATTCTGCTTTCATCATATCCCAGCCCTGCCATTA
TCCTACAGTGAAGATTCACTCTTATCCTCCTGAGATCCTATCTCTTGCAA
GTAATGCTCAGCTTCCAAGGCTGCCATGCACCCAGTGCCGGCGGCGGTAA
CAGCCTGCCTGTACTTCTTATCCTGAACATCTCCAGCAGCAAACACTCCA
GGGACACTAGTGTGTGTAGTCCCAGGTTTGGTAATAATATAACCATCAGA
ATGCAGGTCCAACTGACCATCCAAAAACTTAGTAGCAGGCTCGTGT
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