DN617284

Overview
NameDN617284
Unique NameDN617284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10467 contig Csv1_Contig10467:41..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617284 vs. ExPASy Swiss-Prot
Match: CP27B_RAT (25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial OS=Rattus norvegicus GN=Cyp27b1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.112e-12
Identity = 49/123 (39.84%), Postives = 63/123 (51.22%), Query Frame = -1
Query:  189 LPKLKYLDAVVKESFRLHPALP--LLVPRRASESGSIGGYTIPKDTTLMLNVWAIHRDPQLWDNPLEFRPERFLNVGVESKFDYSGNNFQYLPFGSGRRMCAGIPLAERMLMFVLASLLHSFE 551
            L +L  L AV+KE  RL+P +P    VP R      +G Y IP+DT + L  +A  RDP  +  P  F P R+L  G       + + F  LPFG G+R C G  LAE  L   LA +L  FE
Sbjct:  357 LSQLPLLKAVIKEVLRLYPVVPGNSRVPDRDI---CVGNYVIPQDTLVSLCHYATSRDPAQFREPNSFNPARWLGEGP------APHPFASLPFGFGKRSCIGRRLAELELQMALAQILTHFE 470          
BLAST of DN617284 vs. ExPASy Swiss-Prot
Match: CP27B_MOUSE (25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial OS=Mus musculus GN=Cyp27b1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.112e-12
Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = -1
Query:  189 LPKLKYLDAVVKESFRLHPALP--LLVPRRASESGSIGGYTIPKDTTLMLNVWAIHRDPQLWDNPLEFRPERFLNVGVESKFDYSGNNFQYLPFGSGRRMCAGIPLAERMLMFVLASLLHSFE 551
            L +L  L AV+KE  RL+P +P    VP R      +G Y IP+DT + L  +A  RDP  + +P  F P R+L  G       + + F  LPFG G+R C G  LAE  L   L+ +L  FE
Sbjct:  363 LSQLPLLKAVIKEVLRLYPVVPGNSRVPDRDIR---VGNYVIPQDTLVSLCHYATSRDPTQFPDPNSFNPARWLGEGP------TPHPFASLPFGFGKRSCIGRRLAELELQMALSQILTHFE 476          
BLAST of DN617284 vs. ExPASy Swiss-Prot
Match: C5083_DICDI (Probable cytochrome P450 508A3 OS=Dictyostelium discoideum GN=cyp508a3-1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.112e-12
Identity = 38/138 (27.54%), Postives = 69/138 (50.00%), Query Frame = -1
Query:  123 YLDAVVKESFRLHPALPLLVPRRASESGSIGGYTIPKDTTLMLNVWAIHRDPQLWDNPLEFRPERFLNVGVESKFDYSGNNFQYLPFGSGRRMCAGIPLAERMLMFVLASLLHSFEWELPAGTKLNLSEKFGIVIKKK 536
            Y  + +KE+ R  P   + VPR  S+   IG   IPKD  + +N + + R+   ++NP +F P RF+N            N  +LPF  G R C G   A   +    ++++ +F++    G +++ +E +G+ ++ K
Sbjct:  340 YTVSFIKETLRYKPPSSVGVPRTTSQDIIIGDKFIPKDAQIFINYYGLSRNQDYFENPEQFEPSRFMN---------PDTNIAFLPFSIGTRNCVGQNFALDEMFLAFSNIILNFKFSSIDGKQIDETELYGVTLRCK 468          
BLAST of DN617284 vs. ExPASy Swiss-Prot
Match: CP2D9_MOUSE (Cytochrome P450 2D9 OS=Mus musculus GN=Cyp2d9 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = -1
Query:  171 LKYLDAVVKESFRLHPALPLLVPRRASESGSIGGYTIPKDTTLMLNVWAIHRDPQLWDNPLEFRPERFLNVGVESKFDYSGNNFQ---YLPFGSGRRMCAGIPLAERMLMFVLASLLHSFEWELPAG 542
            + Y +AV+ E  R    +P+ +PR  S    +  + IPK T L+ N+ ++ +D  +W+ PL F PE FL        D  G+  +   ++PF +GRR C G  LA   L      LL  F + +P G
Sbjct:  356 MPYTNAVIHEVQRFGDIVPVNLPRITSHDIEVQDFLIPKGTILLPNMSSMLKDESVWEKPLRFHPEHFL--------DAQGHFVKPEAFMPFSAGRRSCLGEALARMELFLFFTCLLQRFSFSVPDG 474          
BLAST of DN617284 vs. ExPASy Swiss-Prot
Match: CP2AC_MOUSE (Cytochrome P450 2A12 OS=Mus musculus GN=Cyp2a12 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 38/123 (30.89%), Postives = 67/123 (54.47%), Query Frame = -1
Query:  177 KLKYLDAVVKESFRLHPALPLLVPRRASESGSIGGYTIPKDTTLMLNVWAIHRDPQLWDNPLEFRPERFLNVGVESKFDYSGNNFQYLPFGSGRRMCAGIPLAERMLMFVLASLLHSFEWELP 545
            K+ Y  AV+ E  R     PL +PRR +++ S  G+ +PK T +   + ++  DP+ + +P +F P+ FL+   + K         +LPF +G+R C G  LA+  L F+  ++L +F ++ P
Sbjct:  346 KMPYTQAVINEIQRFSNFAPLGIPRRITKNTSFRGFFLPKATEVFPILGSLMTDPKFFSSPKDFNPQHFLDDKGQLK-----KIPAFLPFSTGKRFCLGDSLAKMELFFLFTTILQNFRFKFP 463          
BLAST of DN617284 vs. ExPASy Swiss-Prot
Match: C513B_DICDI (Probable cytochrome P450 513B1 OS=Dictyostelium discoideum GN=cyp513b1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 40/122 (32.79%), Postives = 62/122 (50.82%), Query Frame = -1
Query:  177 LKYLDAVVKESFRLHPALPLLVPRRASESGSIGGYTIPKDTTLMLNVWAIHRDPQLWDNPLEFRPERFLNVGVESKFDYSGNNFQYLPFGSGRRMCAGIPLAERMLMFVLASLLHSFEWELP 542
            + YL   +KE++R HPA P   P   ++   I GYTI K T +  N++A  R    +  P EF PER         ++   N+   + FG+G R C G  LA   +  ++AS+L+ +E+  P
Sbjct:  347 IPYLSLALKENYRKHPAAPFGAPHETTQETVIEGYTIAKGTMIFQNIYATQRSDTFYSQPDEFIPER---------WNGDENSQTLISFGTGIRDCIGKSLAYNEIFTIIASVLNRYEFINP 459          
BLAST of DN617284 vs. ExPASy Swiss-Prot
Match: C13A8_CAEEL (Putative cytochrome P450 CYP13A8 OS=Caenorhabditis elegans GN=cyp-13A8 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 43/131 (32.82%), Postives = 66/131 (50.38%), Query Frame = -1
Query:  162 LPKLKYLDAVVKESFRLHPALPLLVPRRASESGSIGGYTIPKDTTLMLNVWAIHRDPQLWDNPL-EFRPERFLNVGVESKFDYSGNNFQYLPFGSGRRMCAGIPLAERMLMFVLASLLHSFEWELPAGTKL 551
            L KLKY+D V+KES RL P       RR   +  IG   +     +M++ W +H D  +W N + EF+PER+ +     +         YL FG+G R+C G+  A      +L+ +L  + +E  A T+L
Sbjct:  364 LSKLKYMDNVIKESLRLFPFASFANSRRCMRNTVIGEQIVEAGVDVMIDTWTLHHDKNVWGNDVEEFKPERWDSPLTPQQ--------AYLSFGAGPRVCLGMRFALLEQKGLLSHILKKYTFETNAKTQL 486          
BLAST of DN617284 vs. ExPASy Swiss-Prot
Match: CP24A_RAT (1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial OS=Rattus norvegicus GN=Cyp24a1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.603e-12
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = -1
Query:  189 LPKLKYLDAVVKESFRLHPALPLLVPRRASESGSIGGYTIPKDTTLMLNVWAIHRDPQLWDNPLEFRPERFLNVGVESKFDYSGNNFQYLPFGSGRRMCAGIPLAERMLMFVLASLLHSFE 551
            L  + YL A +KES RL P++P    R   +   +G Y +PK T L LN   +      +++  +FRPER+L    E K     N F +LPFG G+RMC G  LAE  L   L  ++  ++
Sbjct:  371 LRNMPYLKACLKESMRLTPSVPFTT-RTLDKPTVLGEYALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQK--EKKI----NPFAHLPFGIGKRMCIGRRLAELQLHLALCWIIQKYD 484          
BLAST of DN617284 vs. ExPASy Swiss-Prot
Match: CP24A_MOUSE (1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial OS=Mus musculus GN=Cyp24a1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.603e-12
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = -1
Query:  192 LKYLDAVVKESFRLHPALPLLVPRRASESGSIGGYTIPKDTTLMLNVWAIHRDPQLWDNPLEFRPERFLNVGVESKFDYSGNNFQYLPFGSGRRMCAGIPLAERMLMFVLASLLHSF 542
            + YL A +KES RL P++P    R   +   +G YT+PK T L LN   +      +++  +FRPER+L    E K     N F +LPFG G+RMC G  LAE  L   L  ++  +
Sbjct:  374 MPYLKACLKESMRLTPSVPFTT-RTLDKPTVLGEYTLPKGTVLTLNTQVLGSSEDNFEDADKFRPERWLEK--EKKI----NPFAHLPFGVGKRMCIGRRLAELQLHLALCWIIQKY 483          
BLAST of DN617284 vs. ExPASy Swiss-Prot
Match: C12C1_DROME (Probable cytochrome P450 12c1, mitochondrial OS=Drosophila melanogaster GN=Cyp12c1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.603e-12
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = -1
Query:  165 LPKLKYLDAVVKESFRLHPALPLLVPRRASESGSIGGYTIPKDTTLMLNVWAIHRDPQLWDNPLEFRPERFLNVGVESKFDYSGNN----FQYLPFGSGRRMCAGIPLAERMLMFVLASLLHSFEWELPAGTK 551
            +  L YL AV+KES RL+P +     R A     + GY IPK T L++    + +D +L+    EF PER+L    + K D   N     F YLPFG G RMC G  + +  +   +A+L+ +F  E    T+
Sbjct:  369 MKSLPYLRAVIKESLRLYP-VTFGNARSAGADVVLDGYRIPKGTKLLMTNSFLLKDDRLYPRAKEFIPERWLRRKDDDKSDVLMNKDLNAFIYLPFGFGPRMCVGKRIVDLEMELTVANLVRNFHIEYNYSTE 500          
The following BLAST results are available for this feature:
BLAST of DN617284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 434
Match NameE-valueIdentityDescription
CP27B_RAT2.112e-1239.8425-hydroxyvitamin D-1 alpha hydroxylase, mitochond... [more]
CP27B_MOUSE2.112e-1239.0225-hydroxyvitamin D-1 alpha hydroxylase, mitochond... [more]
C5083_DICDI2.112e-1227.54Probable cytochrome P450 508A3 OS=Dictyostelium di... [more]
CP2D9_MOUSE2.759e-1232.28Cytochrome P450 2D9 OS=Mus musculus GN=Cyp2d9 PE=1... [more]
CP2AC_MOUSE2.759e-1230.89Cytochrome P450 2A12 OS=Mus musculus GN=Cyp2a12 PE... [more]
C513B_DICDI2.759e-1232.79Probable cytochrome P450 513B1 OS=Dictyostelium di... [more]
C13A8_CAEEL2.759e-1232.82Putative cytochrome P450 CYP13A8 OS=Caenorhabditis... [more]
CP24A_RAT3.603e-1236.361,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho... [more]
CP24A_MOUSE3.603e-1237.611,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho... [more]
C12C1_DROME3.603e-1235.34Probable cytochrome P450 12c1, mitochondrial OS=Dr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617284 ID=DN617284; Name=DN617284; organism=Citrus sinensis; type=EST; length=551bp
ATTAGAACTCTGAAATAACATACAAATCTCTCCGATACTCACAAAATCAT
CACAATCATTTTGTCTTAATGGTAGAGCTCTGAATTGGATAGTCTTGGTG
TTGGAATAGCAACCAAAGGCTCTTTTTTCTTAATGACAATCCCAAATTTT
TCAGATAAGTTTAGCTTTGTGCCAGCTGGCAATTCCCACTCAAATGAGTG
CAATAACGAAGCCAGAACAAACATCAGCATCCTCTCAGCTAGAGGAATCC
CAGCACACATCCTTCTACCAGAACCAAATGGCAAGTACTGAAAATTGTTA
CCTGAGTAATCGAACTTACTCTCGACACCAACATTCAGAAACCTCTCGGG
TCGAAATTCTAAGGGATTATCCCAAAGTTGAGGGTCCCTGTGGATAGCCC
AAACATTCAACATAAGAGTTGTATCTTTGGGAATGGTATAGCCACCAATG
CTGCCACTCTCACTTGCTCTGCGTGGTACTAATAAAGGCAATGCAGGATG
CAGACGAAACGATTCTTTCACCACAGCATCTAAATATTTCAATTTAGGCA
A
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