DN617283

Overview
NameDN617283
Unique NameDN617283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11228 contig Csv1_Contig11228:20..501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.383e-36
Identity = 67/132 (50.76%), Postives = 92/132 (69.70%), Query Frame = 1
Query:   85 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 480
            +K HIN+ V+GHVD+GKST  G L+Y+ G +D++ ++  E+ A ++ K  F +AW+LD+ K ERERG+TI+     FET K + T+ID PGHRDF+KNMI G SQAD A+ +I +  G FEA I   GQ RE
Sbjct:   14 QKPHINLAVVGHVDNGKSTLVGRLLYETGYVDEKALKEIEEMAKKIGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFEAAIGPQGQGRE 145          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.477e-36
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   85 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 480
            +K H+N+ VIGHVD+GKST  G L+Y+ G +D++  +  E+ A +M K  F +AW+LD+ K ERERG+TI+     FET K + T+ID PGHRDFIKNMI G SQAD A+ +I +  G FE  I   GQ RE
Sbjct:   14 QKPHLNLAVIGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFIKNMIVGASQADAALFVISARPGEFETAIGPQGQGRE 145          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.765e-36
Identity = 67/132 (50.76%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   85 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 480
            +K HIN+ V+GHVD+GKST  G L+Y+ G +D++  +  E+ A +M K  F +AW+LD+ K ERERG+TI+     FET K + T+ID PGHRDF+KNMI G SQAD A+ +I +  G FE  I   GQ RE
Sbjct:   14 QKPHINLAVVGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETQKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFETAIGPQGQGRE 145          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.765e-36
Identity = 67/118 (56.78%), Postives = 89/118 (75.42%), Query Frame = 1
Query:   85 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            +K H+N+ VIGHVD GKST  G L+++ G +   +IE+++ EA E  K SF +AWV+D LK ERERG+TIDI+  +F+T KYY TV+D PGHRDF+KNMITG SQAD AVL++ +  G
Sbjct:    3 DKPHMNLAVIGHVDHGKSTFVGRLMFETGAVPAHLIEKYKAEAKEKGKESFAFAWVMDTLKEERERGVTIDISHKRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDG 120          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_META3 (Elongation factor 1-alpha OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=tuf PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.765e-36
Identity = 76/135 (56.30%), Postives = 95/135 (70.37%), Query Frame = 1
Query:   76 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 480
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++IER ++EA+E  K  F++A+V+D LK ERERG+TIDIA  KFE+ KY  T++D PGHRDFIKNMITG SQAD AVL+ D      +A      QTRE
Sbjct:    1 MAKEKPVLNVAFIGHVDAGKSTTVGRLLLDSGTIDPQIIERLKREASEKGKAGFEFAYVMDGLKEERERGVTIDIAHKKFESKKYDVTIVDCPGHRDFIKNMITGASQADAAVLVCDVN----DAKTGLQPQTRE 131          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.666e-35
Identity = 67/132 (50.76%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   85 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 480
            +K HIN+ V+GHVD+GKST  G L+Y+ G +D++  +  E+ A +M K  F +AW+LD+ K ERERG+TI+     FET K + T+ID PGHRDF+KNMI G SQAD A+ +I +  G FE  I   GQ RE
Sbjct:   14 QKPHINLAVVGHVDNGKSTLVGRLLYETGYVDEKGFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFETAIGPQGQGRE 145          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.405e-34
Identity = 65/132 (49.24%), Postives = 93/132 (70.45%), Query Frame = 1
Query:   85 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 480
            +K H+N+V IGHVD+GKST  G ++Y  G +DKR +E++E+EA E N+ ++  +W LD  + ER++G T+++    FET K + T++DAPGH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTRE
Sbjct:   71 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE 202          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.405e-34
Identity = 65/132 (49.24%), Postives = 93/132 (70.45%), Query Frame = 1
Query:   85 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 480
            +K H+N+V IGHVD+GKST  G ++Y  G +DKR +E++E+EA E N+ ++  +W LD  + ER++G T+++    FET K + T++DAPGH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTRE
Sbjct:   71 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE 202          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.405e-34
Identity = 75/137 (54.74%), Postives = 92/137 (67.15%), Query Frame = 1
Query:   76 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTRE 480
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD AVL+  +D    G +       QTRE
Sbjct:    1 MAKEKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVNVDDAKSGIQP------QTRE 131          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.405e-34
Identity = 74/137 (54.01%), Postives = 93/137 (67.88%), Query Frame = 1
Query:   76 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTRE 480
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++I R +KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD A+L+  +D    G +       QTRE
Sbjct:    1 MAKEKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLKKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAILVVNVDDAKSGIQP------QTRE 131          
The following BLAST results are available for this feature:
BLAST of DN617283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_PYRAE4.383e-3650.76Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_PYRIL7.477e-3651.52Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_PYRCJ9.765e-3650.76Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_METBU9.765e-3656.78Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_META39.765e-3656.30Elongation factor 1-alpha OS=Methanococcus aeolicu... [more]
EF1A_PYRAR1.666e-3550.76Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
ERF3A_MOUSE2.405e-3449.24Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_HUMAN2.405e-3449.24Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_METMP2.405e-3454.74Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM52.405e-3454.01Elongation factor 1-alpha OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617283 ID=DN617283; Name=DN617283; organism=Citrus sinensis; type=EST; length=482bp
CAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTA
ATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACATCA
ACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGA
CACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTT
CGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGG
TGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATT
GCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGC
TCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGG
CTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAGCT
GGTATCTCCAAGGATGGTCAGACTCGTGAGCA
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