DN617283

Overview
NameDN617283
Unique NameDN617283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.141e-34
Identity = 74/137 (54.01%), Postives = 92/137 (67.15%), Query Frame = 1
Query:   76 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTRE 480
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD A+L+  +D    G +       QTRE
Sbjct:    1 MAKEKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAILVVNVDDAKSGIQP------QTRE 131          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.141e-34
Identity = 74/137 (54.01%), Postives = 92/137 (67.15%), Query Frame = 1
Query:   76 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTRE 480
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD A+L+  +D    G +       QTRE
Sbjct:    1 MAKEKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAILVVNVDDAKSGIQP------QTRE 131          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.103e-34
Identity = 65/121 (53.72%), Postives = 90/121 (74.38%), Query Frame = 1
Query:   76 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            M ++K H N+ VIGHVD GKST  G L+++ G + + VIE++ +EA E  K  F++A+V+D L  ERERG+TIDIA  +F+T +YY T++D PGHRDF+KNMITG SQAD AVL++ +  G
Sbjct:    1 MSEDKPHQNLAVIGHVDHGKSTMVGRLLFETGSVPEHVIEQYREEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFDTDEYYFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG 121          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.194e-33
Identity = 74/137 (54.01%), Postives = 91/137 (66.42%), Query Frame = 1
Query:   76 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTRE 480
            M K K  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD AVL+  +D    G +       QTRE
Sbjct:    1 MAKTKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVNVDDAKSGIQP------QTRE 131          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.194e-33
Identity = 74/137 (54.01%), Postives = 91/137 (66.42%), Query Frame = 1
Query:   76 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTRE 480
            M K K  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD AVL+  +D    G +       QTRE
Sbjct:    1 MAKTKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVNVDDAKSGIQP------QTRE 131          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.559e-33
Identity = 63/132 (47.73%), Postives = 93/132 (70.45%), Query Frame = 1
Query:   85 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 480
            +K H+N+V IGHVD+GKST  G +++  G +DKR +E++E+EA E N+ ++  +W LD  + ER++G T+++    FET + + T++DAPGH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTRE
Sbjct:  200 KKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETERKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE 331          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: ERF3B_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.559e-33
Identity = 63/132 (47.73%), Postives = 93/132 (70.45%), Query Frame = 1
Query:   85 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 480
            +K H+N+V IGHVD+GKST  G +++  G +D+R +E++E+EA E N+ ++  +W LD  + ER++G T+++    FET K + T++DAPGH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTRE
Sbjct:  204 KKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE 335          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: ERF3B_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.559e-33
Identity = 63/132 (47.73%), Postives = 93/132 (70.45%), Query Frame = 1
Query:   85 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 480
            +K H+N+V IGHVD+GKST  G +++  G +DKR +E++E+EA E N+ ++  +W LD  + ER++G T+++    FET + + T++DAPGH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTRE
Sbjct:  200 KKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETERKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE 331          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: HBS1_YEAST (Elongation factor 1 alpha-like protein OS=Saccharomyces cerevisiae GN=HBS1 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 7.737e-33
Identity = 61/129 (47.29%), Postives = 89/129 (68.99%), Query Frame = 1
Query:   94 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 480
            H++ VV+GHVD+GKST  G L+Y L  +++  + + ++E+  M K SFK+AW++D+   ERERG+T+ I    F T +   T++DAPGHRDF+ N I G SQAD A+L +D +T  FE+G   DGQT+E
Sbjct:  167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE 295          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.320e-32
Identity = 63/118 (53.39%), Postives = 86/118 (72.88%), Query Frame = 1
Query:   85 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            +K H N+ +IGHVD GKST  G L+++ G + + VIE+  +EA E  K  F++A+V+D L  ERERG+TIDIA  +F+T  YY T++D PGHRDF+KNMITG SQAD AVL++ +  G
Sbjct:    3 DKPHQNLAIIGHVDHGKSTLVGRLLFETGSVPEHVIEQHREEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFDTEDYYFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG 120          
The following BLAST results are available for this feature:
BLAST of DN617283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_METM73.141e-3454.01Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM63.141e-3454.01Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_NATPD4.103e-3453.72Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
EF1A_METVS1.194e-3354.01Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METVA1.194e-3354.01Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
ERF3B_PONAB1.559e-3347.73Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_MOUSE1.559e-3347.73Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_HUMAN1.559e-3347.73Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1_YEAST7.737e-3347.29Elongation factor 1 alpha-like protein OS=Saccharo... [more]
EF1A_HALWD1.320e-3253.39Elongation factor 1-alpha OS=Haloquadratum walsbyi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617283 ID=DN617283; Name=DN617283; organism=Citrus sinensis; type=EST; length=482bp
CAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTA
ATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACATCA
ACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGA
CACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTT
CGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGG
TGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATT
GCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGC
TCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGG
CTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAGCT
GGTATCTCCAAGGATGGTCAGACTCGTGAGCA
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