DN617283

Overview
NameDN617283
Unique NameDN617283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_CLOPE (Elongation factor Tu OS=Clostridium perfringens GN=tufA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 46/119 (38.66%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T  +   L              A      +FKY  + DK   E+ERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +  G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVL--------------AQAGGAEAFKYDEI-DKAPEEKERGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_CLOP1 (Elongation factor Tu OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 46/119 (38.66%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T  +   L              A      +FKY  + DK   E+ERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +  G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVL--------------AQAGGAEAFKYDEI-DKAPEEKERGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_ASTLO (Elongation factor Tu, plastid OS=Astasia longa GN=tufA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 48/117 (41.03%), Postives = 64/117 (54.70%), Query Frame = 1
Query:   88 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            K HINI  IGHVD GK+T T  +   L              +   N +S KY  + D    E+ RGITI+ A  ++ET   +   +D PGH D+IKNMITG +Q D A+L+I +T G
Sbjct:   10 KPHINIGTIGHVDHGKTTLTAAITMAL--------------SVTGNTKSKKYEEI-DSSPEEKARGITINTAHVEYETKNRHYAHVDCPGHADYIKNMITGAAQMDGAILVISATDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_APPPP (Elongation factor Tu OS=Apple proliferation phytoplasma GN=tuf PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 45/119 (37.82%), Postives = 66/119 (55.46%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            ++K H+N+  IGHVD GK+T T  +   L            K  AE   +S+     +DK K E+ERGITI+     +ET K +   +D PGH D++KNMITG +Q D  +L++ +  G
Sbjct:    8 RDKVHVNVGTIGHVDHGKTTLTAAITKILS----------TKGLAE--NKSYDQ---IDKTKEEKERGITINTTHVSYETVKRHYAHVDCPGHADYVKNMITGAAQMDAGILVVSAYHG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_ANAPZ (Elongation factor Tu OS=Anaplasma phagocytophilum (strain HZ) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 54/135 (40.00%), Postives = 69/135 (51.11%), Query Frame = 1
Query:   88 KTHINIVVIGHVDSGKSTTTGHLIY----KLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 480
            K HIN+  IGHVD GK+T T  L      KL G +K V                KY  + DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTRE
Sbjct:    6 KPHINVGTIGHVDHGKTTLTAALTTVLARKLSGANKVV----------------KYDEI-DKAPEEKARGITISTAHVEYETEGRHYAHVDCPGHADYIKNMITGAAQMDVAILVVSATDGAMP-------QTRE 116          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_ANAMM (Elongation factor Tu OS=Anaplasma marginale (strain St. Maries) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 54/135 (40.00%), Postives = 69/135 (51.11%), Query Frame = 1
Query:   88 KTHINIVVIGHVDSGKSTTTGHLIY----KLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 480
            K HIN+  IGHVD GK+T T  L      +L G +K V                KY  + DK   ER RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTRE
Sbjct:    6 KPHINVGTIGHVDHGKTTLTAALTTVLTRRLSGANKVV----------------KYDEI-DKAPEERARGITISTAHVEYETEGRHYAHVDCPGHADYIKNMITGAAQMDVAILVVSATDGAMP-------QTRE 116          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_ANADE (Elongation factor Tu OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+N+  IGHVD GK+T T  +                K  A+     F     +DK   ERERGITI  A  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:    8 RSKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLAQKGGAQFLAYDQIDKAPEERERGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_ACIBL (Elongation factor Tu OS=Acidobacteria bacterium (strain Ellin345) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+N+  IGH+D GK+T T  +   L            K   ++  RSF     +D    ERERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G
Sbjct:    8 RSKPHVNVGTIGHIDHGKTTLTAAITKVLS-----------KHNPKIAFRSFDS---IDNAPEERERGITIATAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDG 112          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU2_SHESR (Elongation factor Tu 2 OS=Shewanella sp. (strain MR-7) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+N+  IGHVD GK+T T  + + L        + +  EA + ++        +D    ERERGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ ST G
Sbjct:    8 RNKPHVNVGTIGHVDHGKTTLTAAISHVLA-------KTYGGEAKDFSQ--------IDNAPEERERGITINTSHIEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVASTDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU2_SHESM (Elongation factor Tu 2 OS=Shewanella sp. (strain MR-4) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+N+  IGHVD GK+T T  + + L        + +  EA + ++        +D    ERERGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ ST G
Sbjct:    8 RNKPHVNVGTIGHVDHGKTTLTAAISHVLA-------KTYGGEAKDFSQ--------IDNAPEERERGITINTSHIEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVASTDG 111          
The following BLAST results are available for this feature:
BLAST of DN617283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CLOPE2.501e-1538.66Elongation factor Tu OS=Clostridium perfringens GN... [more]
EFTU_CLOP12.501e-1538.66Elongation factor Tu OS=Clostridium perfringens (s... [more]
EFTU_ASTLO2.501e-1541.03Elongation factor Tu, plastid OS=Astasia longa GN=... [more]
EFTU_APPPP2.501e-1537.82Elongation factor Tu OS=Apple proliferation phytop... [more]
EFTU_ANAPZ2.501e-1540.00Elongation factor Tu OS=Anaplasma phagocytophilum ... [more]
EFTU_ANAMM2.501e-1540.00Elongation factor Tu OS=Anaplasma marginale (strai... [more]
EFTU_ANADE2.501e-1536.97Elongation factor Tu OS=Anaeromyxobacter dehalogen... [more]
EFTU_ACIBL2.501e-1538.66Elongation factor Tu OS=Acidobacteria bacterium (s... [more]
EFTU2_SHESR2.501e-1536.13Elongation factor Tu 2 OS=Shewanella sp. (strain M... [more]
EFTU2_SHESM2.501e-1536.13Elongation factor Tu 2 OS=Shewanella sp. (strain M... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617283 ID=DN617283; Name=DN617283; organism=Citrus sinensis; type=EST; length=482bp
CAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTA
ATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACATCA
ACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGA
CACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTT
CGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGG
TGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATT
GCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGC
TCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGG
CTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAGCT
GGTATCTCCAAGGATGGTCAGACTCGTGAGCA
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