DN617283

Overview
NameDN617283
Unique NameDN617283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU1_STRCU (Elongation factor Tu-1 OS=Streptomyces collinus GN=tuf1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFE--KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGH+D GK+T T         I K + + F    EA+  ++        +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLHDAFPDLNEASAFDQ--------IDKAPEERQRGITISIAHVEYQTETRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDG 113          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU1_SHESR (Elongation factor Tu 1 OS=Shewanella sp. (strain MR-7) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+N+  IGHVD GK+T T  + + L        + +  EA + ++        +D    ERERGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ ST G
Sbjct:    8 RNKPHVNVGTIGHVDHGKTTLTAAISHVLA-------KTYGGEAKDFSQ--------IDNAPEERERGITINTSHIEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVASTDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU1_SHESM (Elongation factor Tu 1 OS=Shewanella sp. (strain MR-4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+N+  IGHVD GK+T T  + + L        + +  EA + ++        +D    ERERGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ ST G
Sbjct:    8 RNKPHVNVGTIGHVDHGKTTLTAAISHVLA-------KTYGGEAKDFSQ--------IDNAPEERERGITINTSHIEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVASTDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU1_CARHZ (Elongation factor Tu 1 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 1
Query:   88 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            K H+NI  IGHVD GK+T T  +   L        +R+++               +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:   10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKRGLAQQKRYDE---------------IDNAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_TOBAC (Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            ++K H+NI  IGHVD GK+T T  L   L  +     +++++               +D    ER RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+     G
Sbjct:   77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE---------------IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSGADG 180          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_SYNS9 (Elongation factor Tu OS=Synechococcus sp. (strain CC9902) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T  +   L    +  ++ +                 +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L+  +T G
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITNVLAKKGQAQVQNYAD---------------IDGAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_SHEPU (Elongation factor Tu OS=Shewanella putrefaciens GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 1
Query:   88 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            K H+N+  IGHVD GK+T T  + + L        + +  EA + ++        +D    ERERGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ ST G
Sbjct:   10 KPHVNVGTIGHVDHGKTTLTAAISHVLA-------KTYGGEAKDFSQ--------IDNAPEERERGITINTSHIEYDTPSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVASTDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_SHEPC (Elongation factor Tu OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 1
Query:   88 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            K H+N+  IGHVD GK+T T  + + L        + +  EA + ++        +D    ERERGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ ST G
Sbjct:   10 KPHVNVGTIGHVDHGKTTLTAAISHVLA-------KTYGGEAKDFSQ--------IDNAPEERERGITINTSHIEYDTPSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVASTDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_SHEB8 (Elongation factor Tu OS=Shewanella baltica (strain OS185) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 1
Query:   88 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            K H+N+  IGHVD GK+T T  + + L        + +  EA + ++        +D    ERERGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ ST G
Sbjct:   10 KPHVNVGTIGHVDHGKTTLTAAISHVLA-------KTYGGEAKDFSQ--------IDNAPEERERGITINTSHIEYDTPSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVASTDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_PSEAK (Elongation factor Tu, chloroplastic OS=Pseudendoclonium akinetum GN=tufA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            ++K H+NI  IGHVD GK+T T  +   L    K   +R+++               +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++    G
Sbjct:    8 RKKQHVNIGTIGHVDHGKTTLTAAITMCLQSFSKNKGKRYDE---------------IDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 111          
The following BLAST results are available for this feature:
BLAST of DN617283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_STRCU2.501e-1538.84Elongation factor Tu-1 OS=Streptomyces collinus GN... [more]
EFTU1_SHESR2.501e-1536.13Elongation factor Tu 1 OS=Shewanella sp. (strain M... [more]
EFTU1_SHESM2.501e-1536.13Elongation factor Tu 1 OS=Shewanella sp. (strain M... [more]
EFTU1_CARHZ2.501e-1537.61Elongation factor Tu 1 OS=Carboxydothermus hydroge... [more]
EFTU_TOBAC3.266e-1535.29Elongation factor Tu, chloroplastic OS=Nicotiana t... [more]
EFTU_SYNS93.266e-1536.97Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SHEPU3.266e-1536.75Elongation factor Tu OS=Shewanella putrefaciens GN... [more]
EFTU_SHEPC3.266e-1536.75Elongation factor Tu OS=Shewanella putrefaciens (s... [more]
EFTU_SHEB83.266e-1536.75Elongation factor Tu OS=Shewanella baltica (strain... [more]
EFTU_PSEAK3.266e-1535.29Elongation factor Tu, chloroplastic OS=Pseudendocl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617283 ID=DN617283; Name=DN617283; organism=Citrus sinensis; type=EST; length=482bp
CAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTA
ATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACATCA
ACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGA
CACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTT
CGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGG
TGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATT
GCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGC
TCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGG
CTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAGCT
GGTATCTCCAAGGATGGTCAGACTCGTGAGCA
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