DN617283

Overview
NameDN617283
Unique NameDN617283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11228 contig Csv1_Contig11228:20..501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_PORYE (Elongation factor Tu, chloroplastic OS=Porphyra yezoensis GN=tufA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 41/119 (34.45%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            ++K H+NI  IGHVD GK+T T  +   L  +     ++F++               +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:    8 RKKPHVNIGTIGHVDHGKTTLTAAISATLSTLGSTAAKKFDE---------------IDAAPEEKARGITINTAHVEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111
[Close]
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_PORPU (Elongation factor Tu, chloroplastic OS=Porphyra purpurea GN=tufA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 41/119 (34.45%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            ++K H+NI  IGHVD GK+T T  +   L  +     ++F++               +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:    8 RKKPHVNIGTIGHVDHGKTTLTAAISATLSTLGSTAAKKFDE---------------IDAAPEEKARGITINTAHVEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111
[Close]
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_PHYMT (Elongation factor Tu OS=Phytoplasma mali (strain AT) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 45/119 (37.82%), Postives = 66/119 (55.46%), Query Frame = 1 
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            ++K H+N+  IGHVD GK+T T  +   L            K  AE   +S+     +DK K E+ERGITI+     +ET K +   +D PGH D++KNMITG +Q D  +L++ +  G
Sbjct:    8 RDKVHVNVGTIGHVDHGKTTLTAAITKILS----------TKGLAE--NKSYDQ---IDKTKEEKERGITINTTHVSYETEKRHYAHVDCPGHADYVKNMITGAAQMDAGILVVSAYHG 111
[Close]
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_PELUB (Elongation factor Tu OS=Pelagibacter ubique GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H NI  IGHVD GK+T T  +   L  +       +++               +DK   E+ERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++++  G
Sbjct:    8 RNKPHCNIGTIGHVDHGKTTLTAAITITLAELGGGKAVAYDQ---------------IDKAPEEKERGITISTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADG 111
[Close]
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_PEA (Elongation factor Tu, chloroplastic OS=Pisum sativum GN=tufA PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            ++K H+NI  IGHVD GK+T T  L   L  +     +++++               +D    ER RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++    G
Sbjct:   87 RKKPHLNIGTIGHVDHGKTTLTAALTMALACLGNSAPKKYDE---------------IDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 190
[Close]
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_LACAC (Elongation factor Tu OS=Lactobacillus acidophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1 
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T  +   L           EK  A+    S      +D    E+ERGITI+ A  ++ET   +   +DAPGH D+IKNMITG +Q D A+L++ +T G
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA----------EKGLAKAEDYS-----QIDAAPEEKERGITINTAHVEYETENRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDG 112
[Close]
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_GUITH (Elongation factor Tu, chloroplastic OS=Guillardia theta GN=tufA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T  +   L               ++   +S K+  + D    ER RGITI+ A  ++ET K+Y   +D PGH D++KNMITG +Q D A+L+  +  G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAISATL---------------SQYTGKSKKFDEI-DSAPEERARGITINTAHVEYETDKWYYAHVDCPGHADYVKNMITGAAQMDGAILVCSAANG 110
[Close]
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_FRAAA (Elongation factor Tu OS=Frankia alni (strain ACN14a) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGH+D GK+T T  +   L               A  +   F     +DK   E+ RGITI IA  +++T K +   +D PGH D+IKNMITG +Q D A+L++ +T G
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTAAITKVL-------------HDAHPDLNPFTPFDQIDKAPEEKARGITISIAHVEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDG 113
[Close]
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_EUGGR (Elongation factor Tu, chloroplastic OS=Euglena gracilis GN=tufA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 1 
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K HINI  IGHVD GK+T T  +   L        +R+E                +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:    8 RTKPHINIGTIGHVDHGKTTLTAAITMALAATGNSKAKRYED---------------IDSAPEEKARGITINTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111
[Close]
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAT (Elongation factor Tu, chloroplastic OS=Chlorokybus atmophyticus GN=tufA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            ++K H+NI  IGHVD GK+T T  +   L        +R+++               +D    ER RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++    G
Sbjct:    8 RKKPHVNIGTIGHVDHGKTTLTAAITMALAASTGAKGKRYDE---------------IDAAPEERARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 111
The following BLAST results are available for this feature:
BLAST of DN617283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PORYE3.266e-1534.45Elongation factor Tu, chloroplastic OS=Porphyra ye... [more]
EFTU_PORPU3.266e-1534.45Elongation factor Tu, chloroplastic OS=Porphyra pu... [more]
EFTU_PHYMT3.266e-1537.82Elongation factor Tu OS=Phytoplasma mali (strain A... [more]
EFTU_PELUB3.266e-1536.13Elongation factor Tu OS=Pelagibacter ubique GN=tuf... [more]
EFTU_PEA3.266e-1535.29Elongation factor Tu, chloroplastic OS=Pisum sativ... [more]
EFTU_LACAC3.266e-1540.34Elongation factor Tu OS=Lactobacillus acidophilus ... [more]
EFTU_GUITH3.266e-1537.82Elongation factor Tu, chloroplastic OS=Guillardia ... [more]
EFTU_FRAAA3.266e-1537.82Elongation factor Tu OS=Frankia alni (strain ACN14... [more]
EFTU_EUGGR3.266e-1536.13Elongation factor Tu, chloroplastic OS=Euglena gra... [more]
EFTU_CHLAT3.266e-1536.13Elongation factor Tu, chloroplastic OS=Chlorokybus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617283 ID=DN617283; Name=DN617283; organism=Citrus sinensis; type=EST; length=482bp
CAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTA
ATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACATCA
ACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGA
CACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTT
CGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGG
TGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATT
GCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGC
TCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGG
CTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAGCT
GGTATCTCCAAGGATGGTCAGACTCGTGAGCA
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