DN617283

Overview
NameDN617283
Unique NameDN617283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_RICBR (Elongation factor Tu OS=Rickettsia bellii (strain RML369-C) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.265e-15
Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK++ T  +   LG  +K + ++++++               +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITMVLGKDNKDIKVKKYDE---------------IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 112          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_RICB8 (Elongation factor Tu OS=Rickettsia bellii (strain OSU 85-389) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.265e-15
Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK++ T  +   LG  +K + ++++++               +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITMVLGKDNKDIKVKKYDE---------------IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 112          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_PICGU (Elongation factor Tu, mitochondrial OS=Pichia guilliermondii GN=TUF1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.265e-15
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T  +                K  +E    +F     +D+   ER RGITI  A  +++T K +   +D PGH D+IKNMITG +Q D A++++ +T G
Sbjct:   32 RSKPHVNIGTIGHVDHGKTTLTAAIT---------------KVLSEKGGANFLDYGSIDRAPEERARGITISTAHVEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDG 135          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_MYCA9 (Elongation factor Tu OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.265e-15
Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFE--KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T         I K + +++    EA+  ++        +D    E+ RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYPDLNEASAFDQ--------IDNAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDG 113          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_LEUCK (Elongation factor Tu OS=Leuconostoc citreum (strain KM20) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.265e-15
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T         I K + E+    A +  +        +D    E+ERGITI+ +  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ +T G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AISKVLAEKQGITATDFAE--------IDNAPEEKERGITINTSHIEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_KOSOT (Elongation factor Tu OS=Kosmotoga olearia (strain TBF 19.5.1) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.265e-15
Identity = 45/119 (37.82%), Postives = 63/119 (52.94%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGH+D GK+T T  +                K  A      F     +DK   E+ RGITI++   ++ET K +   ID PGH D+IKNMITG +Q D A+L++ +T G
Sbjct:    8 RTKPHLNIGTIGHIDHGKTTLTAAIT---------------KALAYKGFADFTPFDAIDKAPEEKARGITINVTHVEYETEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_FLAPJ (Elongation factor Tu OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.265e-15
Identity = 43/119 (36.13%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T              I +   +A     +SF     +D    E+ERGITI+ +  ++ET   +   +D PGH D++KNM+TG +Q D A+L++ +T G
Sbjct:    8 RSKPHLNIGTIGHVDHGKTTLTA------------AITKVLSDAGYCQAKSFDQ---IDNAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_FLAJ1 (Elongation factor Tu OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.265e-15
Identity = 43/119 (36.13%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T              I +   +A     +SF     +D    E+ERGITI+ +  ++ET   +   +D PGH D++KNM+TG +Q D A+L++ +T G
Sbjct:    8 RSKPHLNIGTIGHVDHGKTTLTA------------AITKVLSDAGYCQAKSFDQ---IDNAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_DEISP (Elongation factor Tu OS=Deinonema sp. GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.265e-15
Identity = 43/119 (36.13%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+N+  IGHVD GK+T T  + +     D  +    EK A +           +DK   E+ RGITI+ A  ++ T   + + +D PGH D++KNMITG +Q D A+L++ S  G
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITFTAAASDPTI----EKLAYDQ----------IDKAPEEKARGITINTAHVEYNTPTRHYSHVDCPGHADYVKNMITGAAQMDGAILVVSSADG 112          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_BIFAA (Elongation factor Tu OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.265e-15
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T         I K + E +     E +         +D    E  RGITI+IA  +++T K +   +D PGH DF+KNMITG +Q D A+L++ +T G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AISKVLHEEYPDVNPEYDFNQ------IDSAPEEAARGITINIAHIEYQTEKRHYAHVDCPGHADFVKNMITGAAQMDGAILVVAATDG 113          
The following BLAST results are available for this feature:
BLAST of DN617283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_RICBR4.265e-1535.00Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_RICB84.265e-1535.00Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_PICGU4.265e-1536.97Elongation factor Tu, mitochondrial OS=Pichia guil... [more]
EFTU_MYCA94.265e-1538.02Elongation factor Tu OS=Mycobacterium abscessus (s... [more]
EFTU_LEUCK4.265e-1538.66Elongation factor Tu OS=Leuconostoc citreum (strai... [more]
EFTU_KOSOT4.265e-1537.82Elongation factor Tu OS=Kosmotoga olearia (strain ... [more]
EFTU_FLAPJ4.265e-1536.13Elongation factor Tu OS=Flavobacterium psychrophil... [more]
EFTU_FLAJ14.265e-1536.13Elongation factor Tu OS=Flavobacterium johnsoniae ... [more]
EFTU_DEISP4.265e-1536.13Elongation factor Tu OS=Deinonema sp. GN=tuf PE=3 ... [more]
EFTU_BIFAA4.265e-1538.66Elongation factor Tu OS=Bifidobacterium adolescent... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617283 ID=DN617283; Name=DN617283; organism=Citrus sinensis; type=EST; length=482bp
CAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTA
ATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACATCA
ACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGA
CACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTT
CGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGG
TGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATT
GCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGC
TCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGG
CTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAGCT
GGTATCTCCAAGGATGGTCAGACTCGTGAGCA
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