DN617283

Overview
NameDN617283
Unique NameDN617283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_SPHWW (Elongation factor Tu OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 45/119 (37.82%), Postives = 63/119 (52.94%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H NI  IGHVD GK++ T  +                K  AE    +F     +DK   ERERGITI  A  ++ET + +   +D PGH D++KNMITG +Q D  +L++ +T G
Sbjct:    8 RTKPHCNIGTIGHVDHGKTSLTAAIT---------------KVLAETGGATFVDYANIDKAPEERERGITISTAHVEYETEQRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_SCHPO (Elongation factor Tu, mitochondrial OS=Schizosaccharomyces pombe GN=tuf1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 43/119 (36.13%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            ++K H+NI  IGHVD GK+T T  +                K  +++ + SF     +DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +  D A++++ +T G
Sbjct:   49 RKKPHVNIGTIGHVDHGKTTLTAAIT---------------KCLSDLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDG 152          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_PROWI (Elongation factor Tu, plastid OS=Prototheca wickerhamii GN=tufA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            ++K H+NI  IGHVD GK+T T  +   L              AA    +  KYA + D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++    G
Sbjct:    8 RKKPHVNIGTIGHVDHGKTTLTAAITMAL--------------AARGGGKGKKYAEI-DSAPEEKARGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_NOCSJ (Elongation factor Tu OS=Nocardioides sp. (strain BAA-499 / JS614) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGH+D GK+T T         I K + +++       +   F     +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLHDKYP------DLNPFTPFDEIDKAPEERQRGITISIAHVEYQTESRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDG 113          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_HERAU (Elongation factor Tu OS=Herpetosiphon aurantiacus GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K HINI  IGHVD GK+T T  +                K  A   +  F+    +D    ER RGITI I+  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +  G
Sbjct:    8 RNKPHINIGTIGHVDHGKTTLTAAIT---------------KTMALRGRAEFRAFDQIDNAPEERARGITISISHVEYETENRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAPDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_HELSJ (Elongation factor Tu, plastid OS=Helicosporidium sp. subsp. Simulium jonesii GN=tufA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 46/117 (39.32%), Postives = 61/117 (52.14%), Query Frame = 1
Query:   88 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            K HINI  IGHVD GK+T T  +   L  I               N +   YA + D    E+ RGITI+    ++ET K +   +D PGH D+IKNMITG +Q D A+L++    G
Sbjct:   10 KPHINIGTIGHVDHGKTTLTAAITMALASIG--------------NTKGKNYADI-DSAPEEKARGITINTTHVEYETAKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSGADG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_GRATL (Elongation factor Tu, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=tufA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 41/119 (34.45%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            ++K H+NI  IGHVD GK+T T  +   L   +    ++F++               +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:    8 RKKPHVNIGTIGHVDHGKTTLTAAISATLAAANDTKAKKFDE---------------IDAAPEEKARGITINTAHVEYETQNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_GEOKA (Elongation factor Tu OS=Geobacillus kaustophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T  +   L               A+  K   K    +D    ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITTVL---------------AKQGKAEAKAYDQIDAAPEERERGITISTAHVEYETDARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_CYAPA (Elongation factor Tu, cyanelle OS=Cyanophora paradoxa GN=tufA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1
Query:   88 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            K H+NI  IGHVD GK+T T  +   L    K    ++++               +D    E+ RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:   10 KPHVNIGTIGHVDHGKTTLTAAITTALASQGKGKARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBM (Elongation factor Tu OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111          
The following BLAST results are available for this feature:
BLAST of DN617283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SPHWW5.571e-1537.82Elongation factor Tu OS=Sphingomonas wittichii (st... [more]
EFTU_SCHPO5.571e-1536.13Elongation factor Tu, mitochondrial OS=Schizosacch... [more]
EFTU_PROWI5.571e-1537.82Elongation factor Tu, plastid OS=Prototheca wicker... [more]
EFTU_NOCSJ5.571e-1537.82Elongation factor Tu OS=Nocardioides sp. (strain B... [more]
EFTU_HERAU5.571e-1537.82Elongation factor Tu OS=Herpetosiphon aurantiacus ... [more]
EFTU_HELSJ5.571e-1539.32Elongation factor Tu, plastid OS=Helicosporidium s... [more]
EFTU_GRATL5.571e-1534.45Elongation factor Tu, chloroplastic OS=Gracilaria ... [more]
EFTU_GEOKA5.571e-1537.82Elongation factor Tu OS=Geobacillus kaustophilus G... [more]
EFTU_CYAPA5.571e-1535.90Elongation factor Tu, cyanelle OS=Cyanophora parad... [more]
EFTU_CLOBM5.571e-1536.97Elongation factor Tu OS=Clostridium botulinum (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617283 ID=DN617283; Name=DN617283; organism=Citrus sinensis; type=EST; length=482bp
CAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTA
ATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACATCA
ACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGA
CACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTT
CGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGG
TGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATT
GCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGC
TCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGG
CTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAGCT
GGTATCTCCAAGGATGGTCAGACTCGTGAGCA
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