DN617283

Overview
NameDN617283
Unique NameDN617283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_SHEAM (Elongation factor Tu OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.276e-15
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+N+  IGHVD GK+T T  + + L        + +  EA + ++        +D    ERERGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ +T G
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAISHVLA-------KTYGGEAKDFSQ--------IDNAPEERERGITINTSHIEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_OCEIH (Elongation factor Tu OS=Oceanobacillus iheyensis GN=tuf PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.276e-15
Identity = 43/122 (35.25%), Postives = 66/122 (54.10%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K+H+N+  +GHVD GK+T T  +   + K GG + R  ++                  +D    ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:    8 RSKSHVNVGTLGHVDHGKTTLTAAITTVLAKHGGGEARAYDQ------------------IDGAPEERERGITISTAHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPN (Elongation factor Tu OS=Mycoplasma pneumoniae GN=tuf PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 7.276e-15
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDST 432
            + K H+N+  IGH+D GK+T T  +   L    K    R+++               +DK   E+ RGITI+ A  ++ + K +   +D PGH D+IKNMITG +Q D A+L++ +T
Sbjct:    8 RSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDQ---------------IDKAPEEKARGITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAT 109          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_MYCGE (Elongation factor Tu OS=Mycoplasma genitalium GN=tuf PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.276e-15
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDST 432
            + K H+N+  IGH+D GK+T T  +   L    K    R+++               +DK   E+ RGITI+ A  ++ + K +   +D PGH D+IKNMITG +Q D A+L++ +T
Sbjct:    8 RSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDE---------------IDKAPEEKARGITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAT 109          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_LEPTE (Elongation factor Tu, chloroplastic OS=Leptosira terrestris GN=tufA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.276e-15
Identity = 44/119 (36.97%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            ++K H+NI  IGHVD GK+T T  +   +              AA    +  KY  + D    E++RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++    G
Sbjct:    8 RKKPHVNIGTIGHVDHGKTTLTAAITMAM--------------AARGGGKGKKYDDI-DSAPEEKQRGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_GEOTN (Elongation factor Tu OS=Geobacillus thermodenitrificans (strain NG80-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.276e-15
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T  +   L    K     +++               +D    ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKQGKAEARAYDQ---------------IDAAPEERERGITISTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_DESVM (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=tuf PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.276e-15
Identity = 49/126 (38.89%), Postives = 66/126 (52.38%), Query Frame = 1
Query:   76 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            MGKEK      H+NI  IGH+D GK+T T   I K+ G+                   F     +DK   E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D  +L++ +T G
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTA-AITKVAGL--------------RGNGKFVAFDEIDKAPEEKERGITIATAHVEYETATRHYAHVDCPGHADYIKNMITGAAQMDGGILVVAATDG 111          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_DEIRA (Elongation factor Tu OS=Deinococcus radiodurans GN=tufA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.276e-15
Identity = 43/119 (36.13%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K H+NI  IGHVD GK+T T  + +     D  +    E  A +           +DK   E+ RGITI+ A  +++T   + + +D PGH D++KNMITG +Q D A+L++ S  G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITFTAASADPTI----ETLAYDQ----------IDKAPEEKARGITINTAHVEYQTETRHYSHVDCPGHADYVKNMITGAAQMDGAILVVSSADG 112          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_CYACA (Elongation factor Tu, chloroplastic OS=Cyanidium caldarium GN=tufA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.276e-15
Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K HINI  IGHVD GK+T T  +   L  ID  V +++F++               +D    E+ RGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ +  G
Sbjct:    8 RSKPHINIGTIGHVDHGKTTLTAAISAVLASIDNTVKLKKFDE---------------IDAAPEEKARGITINTSHVEYQTPLRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 112          
BLAST of DN617283 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPN (Elongation factor Tu OS=Chlamydia pneumoniae GN=tuf PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 7.276e-15
Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 1
Query:   82 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 438
            + K HINI  IGHVD GK+T T  +   L G                   SF+    +D    E+ RGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G
Sbjct:    8 RNKPHINIGTIGHVDHGKTTLTAAITRALSGD---------------GLASFRDYSSIDNTPEEKARGITINASHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDG 111          
The following BLAST results are available for this feature:
BLAST of DN617283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SHEAM7.276e-1535.29Elongation factor Tu OS=Shewanella amazonensis (st... [more]
EFTU_OCEIH7.276e-1535.25Elongation factor Tu OS=Oceanobacillus iheyensis G... [more]
EFTU_MYCPN7.276e-1535.04Elongation factor Tu OS=Mycoplasma pneumoniae GN=t... [more]
EFTU_MYCGE7.276e-1535.04Elongation factor Tu OS=Mycoplasma genitalium GN=t... [more]
EFTU_LEPTE7.276e-1536.97Elongation factor Tu, chloroplastic OS=Leptosira t... [more]
EFTU_GEOTN7.276e-1536.13Elongation factor Tu OS=Geobacillus thermodenitrif... [more]
EFTU_DESVM7.276e-1538.89Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]
EFTU_DEIRA7.276e-1536.13Elongation factor Tu OS=Deinococcus radiodurans GN... [more]
EFTU_CYACA7.276e-1535.83Elongation factor Tu, chloroplastic OS=Cyanidium c... [more]
EFTU_CHLPN7.276e-1536.97Elongation factor Tu OS=Chlamydia pneumoniae GN=tu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01A01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617283 ID=DN617283; Name=DN617283; organism=Citrus sinensis; type=EST; length=482bp
CAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTA
ATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACATCA
ACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGA
CACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTT
CGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGG
TGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATT
GCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGC
TCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGG
CTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAGCT
GGTATCTCCAAGGATGGTCAGACTCGTGAGCA
back to top