DN617282

Overview
NameDN617282
Unique NameDN617282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.750e-21
Identity = 43/90 (47.78%), Postives = 66/90 (73.33%), Query Frame = -3
Query:  276 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 545
            GY PVL  HT  +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P +GRFA+RDM QTVA G++ +++K +
Sbjct:  339 GYTPVLHAHTLQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.750e-21
Identity = 47/92 (51.09%), Postives = 67/92 (72.83%), Query Frame = -3
Query:  279 IGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 554
            +G GY PVL  HT+ IA + SE+ ++ID ++GKE EK P+F+K GD+ +VK  P K +V E F ++P LGRFA+RDM +TV VGVI +V+ +
Sbjct:  339 VGVGYTPVLHVHTASIACRVSEITSRIDPKTGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVIIDVKPR 430          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.750e-21
Identity = 43/87 (49.43%), Postives = 66/87 (75.86%), Query Frame = -3
Query:  285 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 545
            GY PV+  HT+ +A +  E+  K+D R+GK +E+ P+F+K GDA +V+  P KP+VVE +SD+PPLGRFA+RDM +T+ +GV+ +V+
Sbjct:  343 GYTPVIHIHTASVASRIVEIKAKLDPRTGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDVK 429          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.750e-21
Identity = 46/90 (51.11%), Postives = 68/90 (75.56%), Query Frame = -3
Query:  285 IGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 554
            IG GYAPV+  HT+ + V+  ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FS++P LGRFA+RDM +T+A G I  V+
Sbjct:  348 IGPGYAPVMHIHTATVPVQIVELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSEFPALGRFALRDMGRTIAAGQIIEVK 437          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = -3
Query:  279 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 545
            GY PV  CHT+ IA  F EL+ K+D R+G+  E+ P FLK GDA +VK+ PT+PMV+E   + P LGRFAVRDM  T+A GV  ++  K
Sbjct:  334 GYTPVFHCHTAQIACSFVELMKKLDPRTGQVKEENPTFLKTGDAAIVKIRPTQPMVIEKVKEIPQLGRFAVRDMGSTIAAGVCMDITPK 422          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  285 IGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 554
            I  GY PV+  HT+ +A + +E++ KID R+GKE+EK P FLK GD  +VK  P KP+VVE +SD+  LGRFA+RDM +T+ +G +  ++
Sbjct:  341 IAVGYTPVIHVHTASVACRITEIIAKIDPRTGKEIEKNPHFLKQGDIAIVKFKPIKPLVVEKYSDFQGLGRFAMRDMGKTIGIGQVLEIK 430          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.102e-21
Identity = 43/90 (47.78%), Postives = 66/90 (73.33%), Query Frame = -3
Query:  276 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 545
            GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTK MV+E   + P +GRFA+RDM QTVA G++ +++K D
Sbjct:  339 GYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAD 428          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.382e-20
Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  276 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 545
            GY PV   HT+ +A  F EL+ K+D R+G+ +E+ P+FLK GDA +VK+ PTKPMV+E   + P LGRFA+RDM  T+A G+  +V+ K+
Sbjct:  338 GYTPVFHAHTAQVACTFIELLKKLDPRTGQVIEENPQFLKTGDAAIVKIKPTKPMVIENVREIPQLGRFAIRDMGMTIAAGMAIDVKAKN 427          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.382e-20
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = -3
Query:  297 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 545
            GY PV+  HT+ IA +F EL  KID R+G+  E+ P+FLK GDA +VK+ PT+PMV+E   D PP+GRFA+RDM  T+  G++
Sbjct:  334 GYTPVVHAHTAQIACRFVELQKKIDPRTGQVKEENPQFLKTGDAAIVKLEPTRPMVIERVKDIPPMGRFAIRDMGMTIGAGMV 416          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.357e-20
Identity = 42/90 (46.67%), Postives = 66/90 (73.33%), Query Frame = -3
Query:  276 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 545
            GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTK MV+E   + P +GRFA+RDM QTVA G++ +++K +
Sbjct:  339 GYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
The following BLAST results are available for this feature:
BLAST of DN617282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_THECE4.750e-2147.78Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_SULAC4.750e-2151.09Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_STAMF4.750e-2149.43Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_PYRIL4.750e-2151.11Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_METMJ6.204e-2152.81Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
EF1A_DESMO6.204e-2148.89Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A_PYRKO8.102e-2147.78Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_METJA1.382e-2050.00Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_ARCFU1.382e-2053.01Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_THEGJ2.357e-2046.67Elongation factor 1-alpha OS=Thermococcus gammatol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617282 ID=DN617282; Name=DN617282; organism=Citrus sinensis; type=EST; length=583bp
ATATATCGAGCACCGACTAAATTTTCAAAATCGAGCACTAACGGCTAATC
TTGAAACAAAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAA
AAAAACTCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTA
AAACAAACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCT
AACTATAGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAG
ACTTGGTGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATC
ACACCAACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAG
AGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCA
TCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCA
AGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTT
GACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTC
CAATCTGGCCCAGGGTGGTTCATGATGATGACC
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