DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_VIGUN (Cytochrome c oxidase subunit 2, mitochondrial (Fragment) OS=Vigna unguiculata GN=COX2 PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 4.609e-61
Identity = 119/170 (70.00%), Postives = 127/170 (74.71%), Query Frame = 3
Query:  159 QMIVRLLEWL---FLTIAPCDAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            + I R L W+   F  IA CDA EPWQLGFQDAATP+MQG                        RALW F  K +PIPQRIVHGTTIEILWTI PSIILMFIAIPSF LLYSMD+VVVDPAITIKAIGHQWYW+YEYSDYN+SDEQSL FDSYM+PEDDLELGQLRLL V
Sbjct:  117 EKIPRALRWMCGGFPAIALCDAPEPWQLGFQDAATPIMQGIMDLHHDIFFFLVQILVFVLWVLSRALWCFRSKISPIPQRIVHGTTIEILWTILPSIILMFIAIPSFTLLYSMDDVVVDPAITIKAIGHQWYWSYEYSDYNNSDEQSLAFDSYMVPEDDLELGQLRLLEV 286          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_ORYSJ (Cytochrome c oxidase subunit 2 OS=Oryza sativa subsp. japonica GN=COX2 PE=3 SV=4)

HSP 1 Score: 229.95 bits (585), Expect = 8.692e-60
Identity = 119/166 (71.69%), Postives = 127/166 (76.51%), Query Frame = 3
Query:  162 MIVRLLEWLFLTIAPCDAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            MI+R LE  FLTIA CDAAEPWQLG QDAATPMMQG                       VRALWHF+ + NPIPQRIVHGTTIEI+ TIFPS+I +FIAIPSFALLYSMD V+VDPAITIKAIGHQWY +YEYSDYNSSDEQSL FDSY IPEDD ELGQ RLL V
Sbjct:    1 MILRSLECRFLTIALCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILILVFVSRMLVRALWHFNEQTNPIPQRIVHGTTIEIIRTIFPSVIPLFIAIPSFALLYSMDGVLVDPAITIKAIGHQWYRSYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEV 166          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CHOCR (Cytochrome c oxidase subunit 2 OS=Chondrus crispus GN=COX2 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.660e-43
Identity = 79/150 (52.67%), Postives = 102/150 (68.00%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            D AE WQ+GFQD ATP+M+G                        R LWHF   +N IP  + HGT IE++WT+ P+ IL+ IA+PSF+LLY+MDE++  PAITIK +GHQWYW+YEYSDY + D+ S+ +DSYMIPE+DLE+GQ RLL V
Sbjct:   15 DVAENWQIGFQDPATPIMEGIINLHYDLMFFICVISVFVSWMLGRTLWHFEQNQNKIPSSLTHGTLIEMIWTVTPAFILLIIAVPSFSLLYAMDEII-SPAITIKTLGHQWYWSYEYSDYLNEDDDSINYDSYMIPEEDLEIGQFRLLEV 163          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CYACA (Cytochrome c oxidase subunit 2 OS=Cyanidium caldarium GN=COX2 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.541e-40
Identity = 79/150 (52.67%), Postives = 102/150 (68.00%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            DAA PWQ+GFQD ATP+M+G                        R L+ F+ K NP+     HGT IE+LWT+ PS++L+ IA+PSFALLYS+DE++ DPAITIKA+G QWYW+YEYSDY + + + L F SY++PE+DLELGQ RLL V
Sbjct:   16 DAARPWQIGFQDPATPIMEGIVNLHHDIIFFLIIIIIFVSWILFRTLFLFNSKTNPVAYNFSHGTFIELLWTLTPSLVLIGIAVPSFALLYSIDEII-DPAITIKAVGRQWYWSYEYSDYVNEENEFLAFHSYILPEEDLELGQFRLLEV 164          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PHYME (Cytochrome c oxidase subunit 2 OS=Phytophthora megasperma GN=COX2 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.485e-40
Identity = 81/150 (54.00%), Postives = 98/150 (65.33%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            D AEPWQLGFQD ATP+M+G                        R +  F  KKN IP  +VHG TIEI+WT  P++IL+ +A+PSFALLYSMDEV+ DP IT+K IG QWYW+YEYSD     ++ LIFDSYMI EDDL +GQ R+L V
Sbjct:   15 DMAEPWQLGFQDPATPVMEGIINFHHDLMFFLISIVVFVCWMLFRVITLFDEKKNKIPATVVHGATIEIIWTSIPALILLTVAVPSFALLYSMDEVI-DPIITLKVIGSQWYWSYEYSDNLEFSDEPLIFDSYMIQEDDLAIGQFRILEV 163          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_USTMA (Cytochrome c oxidase subunit 2 OS=Ustilago maydis GN=COX2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.495e-32
Identity = 68/151 (45.03%), Postives = 94/151 (62.25%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            DA +PWQ+GFQD A+P  +G                          + +F+  K+ +  +   HGT IE++WTI P+++L+ IA PSF LLY MDEV+  P++T+K  GHQWYW+ EYSD+ + D +S+ FDSYM+PE DLE GQLRLL V
Sbjct:   17 DAPQPWQVGFQDGASPTQEGITELHDSIFFYLVIICFGVLWVLSSVIVNFNSNKSQLVYKYANHGTLIELIWTITPALVLIAIAFPSFKLLYLMDEVI-SPSMTVKVAGHQWYWSAEYSDFINEDGESIEFDSYMVPETDLEDGQLRLLEV 166          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX1_DICDI (Cytochrome c oxidase subunit 1+2 OS=Dictyostelium discoideum GN=cox1/2 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.667e-32
Identity = 76/163 (46.63%), Postives = 94/163 (57.67%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYK------------KN-PIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            D A  WQ+GFQD ATP+M+G                        R LW F YK            KN     +I+HGT IEI+WT+ P++IL  IAIPSF LLY+MDE +++P +TIK IGHQWYW+YEY D  S+    + FDSYM+ E DL  GQLRLL V
Sbjct:  518 DFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDE-IINPTVTIKIIGHQWYWSYEYGDNASN---LIEFDSYMVYERDLAEGQLRLLEV 676          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX1_DICCI (Cytochrome c oxidase subunit 1+2 OS=Dictyostelium citrinum GN=cox1/2 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.001e-31
Identity = 75/163 (46.01%), Postives = 95/163 (58.28%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYK------------KN-PIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            D +  WQ+GFQD ATP+M+G                        R LW F YK            KN     +I+HGT IEI+WT+ P++IL  IAIPSF LLY+MDE +++P +TIK IGHQWYW+YEY D +S+    + FDSYM+ E DL  GQLRLL V
Sbjct:  528 DFSRDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFAYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDE-IINPTVTIKIIGHQWYWSYEYGDNSSN---LVEFDSYMVYERDLNEGQLRLLEV 686          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_EMENI (Cytochrome c oxidase subunit 2 OS=Emericella nidulans GN=cox2 PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.708e-31
Identity = 66/151 (43.71%), Postives = 93/151 (61.59%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            DA  PW + FQD+A+P M+G                       +  + +F  KK+PI  + + HGT IE++WTI P+ IL+ IA PSF LLY MDEV+ DP++ + A GHQWYW+Y+Y D+ + D + + FDSY++PE DLE GQ R+L V
Sbjct:   13 DAPTPWGIFFQDSASPQMEGIMELHNNIMFYLAIILFTVTWMMITIIRNFVAKKSPIAHKYMNHGTLIELIWTITPAFILILIAFPSFKLLYLMDEVM-DPSLVVYAEGHQWYWSYQYPDFTNEDNEFIEFDSYIVPESDLEEGQFRMLEV 162          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_METSE (Cytochrome c oxidase subunit 2 OS=Metridium senile GN=COII PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.231e-31
Identity = 76/162 (46.91%), Postives = 94/162 (58.02%), Query Frame = 3
Query:  174 LLEWLFLTIAPCDAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            L  WL +     D  EPWQLG QDAA P+M+                        V+AL    Y +      +V GT +EI+WTI P+IIL+ IA PS  LLY MDEV+ DPA+TIKAIGHQWYW+YEYSDY +   ++L FDSYM+P  +L  G  RLL V
Sbjct:    5 LNNWLIINQFGYDLPEPWQLGLQDAAHPVMEEIIFFHDQVMFILIIIITTVLWLIVKALSGKAYHRY-----LVDGTLLEIIWTIVPAIILILIAFPSLKLLYLMDEVM-DPALTIKAIGHQWYWSYEYSDYQT---ETLEFDSYMVPTSELNKGDFRLLEV 157          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_VIGUN4.609e-6170.00Cytochrome c oxidase subunit 2, mitochondrial (Fra... [more]
COX2_ORYSJ8.692e-6071.69Cytochrome c oxidase subunit 2 OS=Oryza sativa sub... [more]
COX2_CHOCR5.660e-4352.67Cytochrome c oxidase subunit 2 OS=Chondrus crispus... [more]
COX2_CYACA1.541e-4052.67Cytochrome c oxidase subunit 2 OS=Cyanidium caldar... [more]
COX2_PHYME4.485e-4054.00Cytochrome c oxidase subunit 2 OS=Phytophthora meg... [more]
COX2_USTMA4.495e-3245.03Cytochrome c oxidase subunit 2 OS=Ustilago maydis ... [more]
COX1_DICDI7.667e-3246.63Cytochrome c oxidase subunit 1+2 OS=Dictyostelium ... [more]
COX1_DICCI1.001e-3146.01Cytochrome c oxidase subunit 1+2 OS=Dictyostelium ... [more]
COX2_EMENI1.708e-3143.71Cytochrome c oxidase subunit 2 OS=Emericella nidul... [more]
COX2_METSE2.231e-3146.91Cytochrome c oxidase subunit 2 OS=Metridium senile... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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