DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_MACCA (Cytochrome c oxidase subunit 2 OS=Macrotus californicus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 61/148 (41.22%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLGFQDA +P+M+                           L       N      +    +E +WTI P+IIL+ IA+PS  +LY MDE+  +PA+TIK +GHQWYW+YEY+DY+      L FDSYM+P  DL+ G+LRLL V
Sbjct:    2 AYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYVISAML-----TTNLTHTSTMDAQEVETIWTILPAIILITIALPSLRILYMMDEIN-NPAMTIKTMGHQWYWSYEYTDYH-----DLSFDSYMVPTSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_LOPFL (Cytochrome c oxidase subunit 2 OS=Lophuromys flavopunctatus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 57/153 (37.25%), Postives = 88/153 (57.52%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA++P+M+                               +   + +  ++ H +T     +E +WT+ P++IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     +SL FDSYM+P +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDASSPIMEELTNFHDHTLMIVFLISSLV----------LYIISSMLTTKMTHTSTMDAQEVETIWTVLPAVILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----ESLCFDSYMVPTNDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CYPCA (Cytochrome c oxidase subunit 2 OS=Cyprinus carpio GN=mt-co2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 61/146 (41.78%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            A P QLGF+DAA P+M+                           +           + I+    IEI+WTI P++IL+ IA+PS  +LY MDE+  DP +TIKA+GHQWYW+YEY+DY     ++L FDSYM+P  DL  GQ RLL
Sbjct:    2 AHPTQLGFKDAAMPVMEELLHFHDHALMIVLLISTLVLYIITAMV-----STKLTNKYILDSQEIEIVWTILPAVILVLIALPSLRILYLMDEIN-DPHLTIKAMGHQWYWSYEYTDY-----ENLGFDSYMVPTQDLAPGQFRLL 136          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMQA (Cytochrome c oxidase subunit 2 OS=Tamias quadrimaculatus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P++LGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYM+P  DL  G+LRLL V
Sbjct:    2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMVPTSDLSPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_RHIUN (Cytochrome c oxidase subunit 2 OS=Rhinoceros unicornis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 62/153 (40.52%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++TIK +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLL V
Sbjct:    2 AYPLQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPSLTIKTMGHQWYWSYEYTDY-----EDLTFDSYMIPTSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_RHIDA (Cytochrome c oxidase subunit 2 OS=Rhinolophus darlingi GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLGFQDA +P+M+                           L             + H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLL V
Sbjct:    2 AHPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLLL----------TTSLTHTSTMDAQEVETIWTILPAIILIMIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLSFDSYMIPTSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_MALLO (Cytochrome c oxidase subunit 2 OS=Malacomys longipes GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                               +   + +  ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYM+P +DL+ G LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELANFHDHTLMIVFLISSLV----------LYIISSMLTTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMVPTNDLKPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_HYLPR (Cytochrome c oxidase subunit 2 OS=Hylomyscus parvus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 59/153 (38.56%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA++P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYM+P DDL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDASSPIMEELINFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMVPTDDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TATRO (Cytochrome c oxidase subunit 2 OS=Tatera robusta GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23
Identity = 60/148 (40.54%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                        V  L         I    +    +E +WTI P+IIL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP ++L+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIME-----ELTNFHDHTLMIVFLISSLVLYLISLMLSTKLIHTSTMDAQEVETIWTILPAIILIMIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLSFDSYMIPTNELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SQUAC (Cytochrome c oxidase subunit 2 OS=Squalus acanthias GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23
Identity = 62/146 (42.47%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            A P QLGFQDAA+P+M+                        +  +           + I+    IEI+WTI P++IL+ IA+PS  +LY MDE+  DP +TIKA+GHQWYW+YEY+DY     + L FDSYMI   DL  GQ RLL
Sbjct:    2 AHPSQLGFQDAASPVMEELLHFHDHTLMIVFLISTLVLYIIMAMV-----STKLTNKYILDSQEIEIVWTILPAVILIMIALPSLRILYLMDEIN-DPHLTIKAMGHQWYWSYEYTDY-----EDLGFDSYMIQTQDLTPGQFRLL 136          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_MACCA4.981e-2341.22Cytochrome c oxidase subunit 2 OS=Macrotus califor... [more]
COX2_LOPFL4.981e-2337.25Cytochrome c oxidase subunit 2 OS=Lophuromys flavo... [more]
COX2_CYPCA4.981e-2341.78Cytochrome c oxidase subunit 2 OS=Cyprinus carpio ... [more]
COX2_TAMQA6.506e-2339.22Cytochrome c oxidase subunit 2 OS=Tamias quadrimac... [more]
COX2_RHIUN6.506e-2340.52Cytochrome c oxidase subunit 2 OS=Rhinoceros unico... [more]
COX2_RHIDA6.506e-2339.87Cytochrome c oxidase subunit 2 OS=Rhinolophus darl... [more]
COX2_MALLO6.506e-2337.91Cytochrome c oxidase subunit 2 OS=Malacomys longip... [more]
COX2_HYLPR6.506e-2338.56Cytochrome c oxidase subunit 2 OS=Hylomyscus parvu... [more]
COX2_TATRO8.497e-2340.54Cytochrome c oxidase subunit 2 OS=Tatera robusta G... [more]
COX2_SQUAC8.497e-2342.47Cytochrome c oxidase subunit 2 OS=Squalus acanthia... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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