DN135279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SCYCA (Cytochrome c oxidase subunit 2 OS=Scyliorhinus canicula GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23 Identity = 63/146 (43.15%), Postives = 80/146 (54.79%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653 A P QLGFQDAA+P+M+ + + I+ IEI+WTI P+IIL+ IA+PS +LY MDE+ DP +TIKA+GHQWYW+YEY+DY + L FDSYMI DL GQ RLL Sbjct: 2 AHPSQLGFQDAASPVMEELIHFHDHTLMIVFLISTLVLYIITAMV-----STKLTNKYILDSQEIEIVWTILPAIILIMIALPSLRILYLMDEIN-DPHLTIKAMGHQWYWSYEYTDY-----EDLGFDSYMIQTQDLTPGQFRLL 136
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_MAXSU (Cytochrome c oxidase subunit 2 OS=Maxomys surifer GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23 Identity = 60/153 (39.22%), Postives = 85/153 (55.56%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P+QLG QDA +P+M+ L ++ H +T +E +WTI P++IL+ IA+PS +LY MDE+ +PA+T+K +GHQWYW+YEY+DY + L FDSYMIP +DL+ G+LRLL V Sbjct: 2 AYPFQLGLQDATSPIMEELMNFHDHTLMIVFLISTLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_HYBUN (Cytochrome c oxidase subunit 2 OS=Hybomys univittatus GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23 Identity = 60/153 (39.22%), Postives = 85/153 (55.56%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P+QLG QDA +P+M+ L ++ H +T +E +WTI P++IL+ IA+PS +LY MDE+ +PA+T+K +GHQWYW+YEY+DY + L FDSYMIP +DL+ G+LRLL V Sbjct: 2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISTLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_BERBO (Cytochrome c oxidase subunit 2 OS=Berylmys bowersi GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23 Identity = 60/153 (39.22%), Postives = 85/153 (55.56%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P+QLG QDA +P+M+ L ++ H +T +E +WTI P++IL+ IA+PS +LY MDE+ +PA+T+K +GHQWYW+YEY+DY + L FDSYMIP +DL+ G+LRLL V Sbjct: 2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SUNME (Cytochrome c oxidase subunit 2 OS=Sundamys muelleri GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.110e-22 Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P+QLG QDA +P+M+ L ++ H T +E +WTI P++IL+ IA+PS +LY MDE+ +PA+T+K +GHQWYW+YEY+DY + L FDSYMIP +DL+ G+LRLL V Sbjct: 2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTNTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_RABIT (Cytochrome c oxidase subunit 2 OS=Oryctolagus cuniculus GN=MT-CO2 PE=3 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 1.110e-22 Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P+QLGFQDA++P+M+ L ++ H +T +E +WTI P+IIL+ IA+PS +LY MDE+ +P++T+K +GHQWYW+YEY+DY + L FDSYMIP DL G LRLL V Sbjct: 2 AYPFQLGFQDASSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLNPGDLRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SCICA (Cytochrome c oxidase subunit 2 OS=Sciurus carolinensis GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22 Identity = 60/153 (39.22%), Postives = 85/153 (55.56%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P++LGFQDA +P+M+ L ++ H +T +E +WTI P+IIL+ IA+PS +LY MDE+ DP++T+K +GHQWYW+YEY+DY + L FDSYMIP +L+ G+LRLL V Sbjct: 2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRVLYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSELKPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_RICPR (Probable cytochrome c oxidase subunit 2 OS=Rickettsia prowazekii GN=ctaC PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22 Identity = 63/174 (36.21%), Postives = 94/174 (54.02%), Query Frame = 3 Query: 144 KNEAKQMIVRLLEWLFLTIAPCDAAEP--WQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 K E ++ + L+ +L +T + C A+EP WQ+ FQ A+P+M+ F+ K NP+P + H IEI+WT+ P IIL+ IA+PSF +L E + + +TIK +G+QWYW Y Y DY+ +L FDS MI + +L++GQ RLL V Sbjct: 44 KMELWKIYITLIYFL-ITNSNCFASEPLAWQITFQPPASPIMEELYHFHNFLLYIGTAIVLFVAGLLGFVCIRFNAKNNPVPAKFAHNLLIEIIWTVIPIIILVIIAVPSFRILRHA-EKIPEIDLTIKVVGYQWYWHYIYPDYD-----NLEFDSVMISDKNLQIGQKRLLDV 210
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_RHYIS (Cytochrome c oxidase subunit 2 OS=Rhynchomys isarogensis GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22 Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P+QLG QDA +P+M+ L ++ H +T +E +WTI P++IL+ IA+PS +LY MDE+ +PA+T+K +GHQWYW+YEY+DY + L FDSYMIP +DL+ G LRLL V Sbjct: 2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGDLRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PARLI (Cytochrome c oxidase subunit 2 OS=Paracentrotus lividus GN=COII PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22 Identity = 60/144 (41.67%), Postives = 79/144 (54.86%), Query Frame = 3 Query: 228 QLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 Q G QDA++P+M+ V L + + + G +E +WT+ P+ IL+FIA+PS LLY MDEV +P +TIKAIGHQWYW+YEY+DYN L FDSYM+P D+ LG RLL V Sbjct: 6 QFGLQDASSPLMEELTYFHDYALIVLTLITILVFYGLVSLLL-----SSSTNRFFLEGQELETIWTVVPAFILIFIALPSLQLLYLMDEVN-NPFLTIKAIGHQWYWSYEYTDYN-----DLEFDSYMVPTSDVSLGNPRLLEV 138 The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 302
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Sequences
The
following sequences are available for this feature:
EST sequence >DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bpback to top |