DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SCYCA (Cytochrome c oxidase subunit 2 OS=Scyliorhinus canicula GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23
Identity = 63/146 (43.15%), Postives = 80/146 (54.79%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            A P QLGFQDAA+P+M+                           +           + I+    IEI+WTI P+IIL+ IA+PS  +LY MDE+  DP +TIKA+GHQWYW+YEY+DY     + L FDSYMI   DL  GQ RLL
Sbjct:    2 AHPSQLGFQDAASPVMEELIHFHDHTLMIVFLISTLVLYIITAMV-----STKLTNKYILDSQEIEIVWTILPAIILIMIALPSLRILYLMDEIN-DPHLTIKAMGHQWYWSYEYTDY-----EDLGFDSYMIQTQDLTPGQFRLL 136          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_MAXSU (Cytochrome c oxidase subunit 2 OS=Maxomys surifer GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23
Identity = 60/153 (39.22%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELMNFHDHTLMIVFLISTLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_HYBUN (Cytochrome c oxidase subunit 2 OS=Hybomys univittatus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23
Identity = 60/153 (39.22%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISTLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_BERBO (Cytochrome c oxidase subunit 2 OS=Berylmys bowersi GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23
Identity = 60/153 (39.22%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SUNME (Cytochrome c oxidase subunit 2 OS=Sundamys muelleri GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.110e-22
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H  T     +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTNTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_RABIT (Cytochrome c oxidase subunit 2 OS=Oryctolagus cuniculus GN=MT-CO2 PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.110e-22
Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLGFQDA++P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G LRLL V
Sbjct:    2 AYPFQLGFQDASSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLNPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SCICA (Cytochrome c oxidase subunit 2 OS=Sciurus carolinensis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 60/153 (39.22%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P++LGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRVLYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_RICPR (Probable cytochrome c oxidase subunit 2 OS=Rickettsia prowazekii GN=ctaC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 63/174 (36.21%), Postives = 94/174 (54.02%), Query Frame = 3
Query:  144 KNEAKQMIVRLLEWLFLTIAPCDAAEP--WQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            K E  ++ + L+ +L +T + C A+EP  WQ+ FQ  A+P+M+                              F+ K NP+P +  H   IEI+WT+ P IIL+ IA+PSF +L    E + +  +TIK +G+QWYW Y Y DY+     +L FDS MI + +L++GQ RLL V
Sbjct:   44 KMELWKIYITLIYFL-ITNSNCFASEPLAWQITFQPPASPIMEELYHFHNFLLYIGTAIVLFVAGLLGFVCIRFNAKNNPVPAKFAHNLLIEIIWTVIPIIILVIIAVPSFRILRHA-EKIPEIDLTIKVVGYQWYWHYIYPDYD-----NLEFDSVMISDKNLQIGQKRLLDV 210          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_RHYIS (Cytochrome c oxidase subunit 2 OS=Rhynchomys isarogensis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PARLI (Cytochrome c oxidase subunit 2 OS=Paracentrotus lividus GN=COII PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 60/144 (41.67%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  228 QLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            Q G QDA++P+M+                        V  L       +   +  + G  +E +WT+ P+ IL+FIA+PS  LLY MDEV  +P +TIKAIGHQWYW+YEY+DYN      L FDSYM+P  D+ LG  RLL V
Sbjct:    6 QFGLQDASSPLMEELTYFHDYALIVLTLITILVFYGLVSLLL-----SSSTNRFFLEGQELETIWTVVPAFILIFIALPSLQLLYLMDEVN-NPFLTIKAIGHQWYWSYEYTDYN-----DLEFDSYMVPTSDVSLGNPRLLEV 138          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_SCYCA8.497e-2343.15Cytochrome c oxidase subunit 2 OS=Scyliorhinus can... [more]
COX2_MAXSU8.497e-2339.22Cytochrome c oxidase subunit 2 OS=Maxomys surifer ... [more]
COX2_HYBUN8.497e-2339.22Cytochrome c oxidase subunit 2 OS=Hybomys univitta... [more]
COX2_BERBO8.497e-2339.22Cytochrome c oxidase subunit 2 OS=Berylmys bowersi... [more]
COX2_SUNME1.110e-2239.22Cytochrome c oxidase subunit 2 OS=Sundamys mueller... [more]
COX2_RABIT1.110e-2239.87Cytochrome c oxidase subunit 2 OS=Oryctolagus cuni... [more]
COX2_SCICA1.449e-2239.22Cytochrome c oxidase subunit 2 OS=Sciurus caroline... [more]
COX2_RICPR1.449e-2236.21Probable cytochrome c oxidase subunit 2 OS=Rickett... [more]
COX2_RHYIS1.449e-2239.22Cytochrome c oxidase subunit 2 OS=Rhynchomys isaro... [more]
COX2_PARLI1.449e-2241.67Cytochrome c oxidase subunit 2 OS=Paracentrotus li... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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